Wall clock time and date at job start Sun Mar 29 2020 21:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47266 * 2 1 4 4 C 1.53002 * 109.47135 * 239.99849 * 2 1 3 5 5 C 1.50695 * 109.46774 * 65.00100 * 4 2 1 6 6 H 1.08001 * 120.00397 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99949 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99939 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47400 * 59.99778 * 9 7 5 11 11 H 1.48500 * 109.46844 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46850 * 299.99552 * 9 7 5 13 13 C 1.53002 * 109.46817 * 120.00158 * 2 1 3 14 14 N 1.46894 * 109.47176 * 294.99705 * 13 2 1 15 15 C 1.46905 * 111.00199 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47310 * 179.97438 * 15 14 13 17 17 H 1.08999 * 115.54879 * 29.33200 * 16 15 14 18 18 C 1.53069 * 117.53386 * 243.61330 * 16 15 14 19 19 C 1.53000 * 59.98584 * 252.53081 * 18 16 15 20 20 H 1.09002 * 117.49833 * 107.50105 * 19 18 16 21 21 C 1.52996 * 117.50107 * 252.50051 * 19 18 16 22 22 H 1.09001 * 109.46788 * 299.99883 * 1 2 3 23 23 H 1.08999 * 109.47086 * 59.99576 * 1 2 3 24 24 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47050 * 185.00259 * 4 2 1 26 26 H 1.09001 * 109.47225 * 305.00660 * 4 2 1 27 27 H 0.97004 * 120.00017 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47011 * 174.99897 * 13 2 1 29 29 H 1.08999 * 109.47140 * 54.99845 * 13 2 1 30 30 H 1.00904 * 111.00318 * 56.04800 * 14 13 2 31 31 H 1.08997 * 109.46836 * 60.00109 * 15 14 13 32 32 H 1.08999 * 109.46866 * 299.99757 * 15 14 13 33 33 H 1.09008 * 117.49334 * 145.04636 * 18 16 15 34 34 H 1.08999 * 117.51639 * 0.02562 * 18 16 15 35 35 H 1.09000 * 109.47181 * 128.74600 * 21 19 18 36 36 H 1.09005 * 109.47217 * 248.74944 * 21 19 18 37 37 H 1.09003 * 109.47442 * 8.74445 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6747 -1.5198 -3.8512 9 14 1.4988 0.5629 -5.2496 10 1 2.0919 1.9229 -5.1871 11 1 1.9926 -0.1379 -6.4621 12 1 0.0189 0.6705 -5.3089 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0373 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7034 0.1914 4.8892 17 1 0.7848 0.7668 4.7751 18 6 2.8126 0.7952 5.7542 19 6 2.0023 -0.3957 6.2701 20 1 2.5001 -1.3647 6.3080 21 6 0.9885 -0.1307 7.3849 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7995 -1.2055 26 1 1.6053 -1.7198 -1.2952 27 1 2.9219 -1.8428 -4.7318 28 1 3.1262 -0.7996 1.2056 29 1 1.6053 -1.7198 1.2951 30 1 0.6528 0.1793 2.4753 31 1 3.2126 -0.7038 3.6401 32 1 1.6920 -1.6246 3.7301 33 1 2.6231 1.7676 6.2089 34 1 3.8435 0.6100 5.4527 35 1 0.0203 -0.5434 7.1012 36 1 1.3293 -0.6037 8.3059 37 1 0.8936 0.9437 7.5419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:52 Heat of formation + Delta-G solvation = -6.546314 kcal Electronic energy + Delta-G solvation = -13659.365646 eV Core-core repulsion = 11436.194761 eV Total energy + Delta-G solvation = -2223.170884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.36110 -36.50979 -33.64832 -31.83768 -29.00003 -27.01235 -26.21197 -24.22285 -22.08934 -21.13706 -20.42723 -18.86019 -16.41673 -15.62958 -15.26663 -14.76989 -14.43677 -13.84807 -13.54132 -13.19047 -13.06615 -12.37570 -12.29044 -12.12473 -11.79337 -11.51811 -11.36361 -11.17758 -10.85486 -10.73082 -10.33699 -10.21596 -10.03840 -9.87976 -9.65224 -9.10814 -8.93873 -8.30267 -8.06700 -5.95114 -3.96254 3.36386 3.40520 3.43196 3.64231 4.31855 4.50640 4.75277 4.77813 4.97817 5.16183 5.40027 5.40529 5.47772 5.58815 5.69683 5.71021 5.76289 5.83303 5.84660 5.91843 6.08862 6.11761 6.26072 6.29834 6.50565 6.59355 6.98563 7.13645 7.20580 7.42596 7.70219 7.73240 7.89330 8.05289 8.49250 9.09946 9.66908 11.16446 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.080973 B = 0.004450 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.709819 B = 6290.341306 C = 6388.674414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.088 3.912 16 C -0.141 4.141 17 H 0.104 0.896 18 C -0.170 4.170 19 C -0.160 4.160 20 H 0.101 0.899 21 C -0.121 4.121 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.260 0.740 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.337 0.663 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 1.866 17.877 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.320 5.320 15 C -0.042 4.042 16 C -0.159 4.159 17 H 0.122 0.878 18 C -0.207 4.207 19 C -0.179 4.179 20 H 0.119 0.881 21 C -0.178 4.178 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.892 2.166 17.703 17.936 hybrid contribution -0.777 -0.330 -0.896 1.231 sum -2.669 1.836 16.807 17.117 Atomic orbital electron populations 1.21742 0.96708 1.00415 1.00262 1.21225 0.94863 1.00107 0.94146 0.91635 1.19108 0.96130 0.95358 0.90367 1.21213 1.34672 1.08273 0.91009 0.92602 1.25025 0.95350 0.95096 0.99094 1.69959 1.39100 1.21213 1.23464 0.86683 0.78849 0.80152 0.82460 1.20256 1.21388 1.20313 1.22137 1.00318 0.94412 0.89594 1.60549 1.19504 1.50614 1.01358 1.21504 1.00145 0.94170 0.88352 1.22384 1.00225 1.02646 0.90652 0.87766 1.23159 0.96799 0.96992 1.03735 1.22410 1.02073 0.98215 0.95222 0.88074 1.21345 0.98035 1.01453 0.96981 0.94950 0.91872 0.94048 0.96672 0.96766 0.93054 0.91543 0.95898 0.84396 0.91167 0.95355 0.89050 0.88855 0.92334 0.92360 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.15 5.14 -3.83 -0.02 1.13 16 14 N -0.69 -10.61 6.50 -113.78 -0.74 -11.35 16 15 C 0.09 1.15 5.97 -3.82 -0.02 1.13 16 16 C -0.14 -1.58 5.67 -90.58 -0.51 -2.09 16 17 H 0.10 1.18 8.13 -51.93 -0.42 0.75 16 18 C -0.17 -1.73 9.83 -26.70 -0.26 -1.99 16 19 C -0.16 -1.54 6.12 -90.62 -0.56 -2.09 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 21 C -0.12 -0.98 10.19 37.16 0.38 -0.60 16 22 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 23 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.34 4.90 6.98 -39.29 -0.27 4.62 16 31 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.86 8.05 -51.92 -0.42 0.44 16 34 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -29.57 300.58 -8.70 -38.27 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.79 Total: -0.27 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.41 Total: -21.50 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.00 Total: -37.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.57 -8.70 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.723 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds