Wall clock time and date at job start Sun Mar 29 2020 21:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 N 1.46904 * 109.47168 * 294.99923 * 13 2 1 15 15 C 1.46899 * 110.99863 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47258 * 179.97438 * 15 14 13 17 17 H 1.09000 * 115.54782 * 330.58803 * 16 15 14 18 18 C 1.53003 * 117.49905 * 116.25042 * 16 15 14 19 19 C 1.52997 * 117.50340 * 184.91241 * 16 15 14 20 20 H 1.09005 * 117.49461 * 359.97438 * 19 16 15 21 21 C 1.52991 * 117.49933 * 145.02093 * 19 16 15 22 22 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 23 23 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 25 25 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 26 26 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46836 * 55.00139 * 13 2 1 29 29 H 1.08999 * 109.47079 * 174.99945 * 13 2 1 30 30 H 1.00901 * 110.99599 * 56.04549 * 14 13 2 31 31 H 1.09001 * 109.46872 * 300.00154 * 15 14 13 32 32 H 1.09005 * 109.47218 * 60.00102 * 15 14 13 33 33 H 1.09001 * 117.49739 * 214.98535 * 18 16 15 34 34 H 1.09002 * 117.49795 * 359.97438 * 18 16 15 35 35 H 1.08997 * 109.46975 * 60.00454 * 21 19 16 36 36 H 1.09005 * 109.46783 * 180.02562 * 21 19 16 37 37 H 1.09004 * 109.47441 * 300.00146 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4457 15 6 2.1258 -0.6265 3.6672 16 6 1.7035 0.1916 4.8892 17 1 1.6094 1.2652 4.7264 18 6 0.7327 -0.4613 5.8752 19 6 2.2029 -0.2744 6.2582 20 1 2.8320 -1.1641 6.2883 21 6 2.5315 0.8023 7.2942 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.6053 -1.7197 -1.2952 26 1 3.1263 -0.7994 -1.2057 27 1 2.9221 -1.8424 -4.7319 28 1 1.6054 -1.7197 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 0.6528 0.1793 2.4753 31 1 1.6921 -1.6245 3.7300 32 1 3.2128 -0.7036 3.6400 33 1 0.0002 0.1830 6.3615 34 1 0.3945 -1.4734 5.6531 35 1 1.6392 1.3937 7.4992 36 1 2.8733 0.3287 8.2146 37 1 3.3167 1.4517 6.9070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:53 Heat of formation + Delta-G solvation = -6.840681 kcal Electronic energy + Delta-G solvation = -13663.033451 eV Core-core repulsion = 11439.849802 eV Total energy + Delta-G solvation = -2223.183649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.38610 -36.50253 -33.64021 -31.83540 -28.99177 -27.01577 -26.19591 -24.26944 -22.12584 -21.05818 -20.40944 -18.86351 -16.48283 -15.92293 -14.84607 -14.80222 -14.41902 -13.80857 -13.55600 -13.31667 -13.10539 -12.40955 -12.22337 -12.07242 -11.84478 -11.51073 -11.42057 -11.15825 -10.85603 -10.72083 -10.34365 -10.21271 -10.04545 -9.83702 -9.67327 -9.10853 -8.93750 -8.30233 -8.09652 -5.95094 -3.96228 3.36403 3.40572 3.43216 3.62630 4.28101 4.50568 4.71812 4.77836 4.99285 5.15159 5.36656 5.40548 5.51916 5.61375 5.67113 5.70077 5.73529 5.82740 5.85917 5.96342 6.08688 6.10268 6.25421 6.30772 6.51067 6.59581 6.98739 7.13720 7.20675 7.42712 7.70746 7.73472 7.89354 8.05324 8.49277 9.09972 9.66944 11.16473 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.080118 B = 0.004449 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.398963 B = 6292.706302 C = 6383.500211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.088 3.912 16 C -0.143 4.143 17 H 0.112 0.888 18 C -0.182 4.182 19 C -0.154 4.154 20 H 0.101 0.899 21 C -0.121 4.121 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.338 0.662 31 H 0.026 0.974 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 1.965 17.857 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.321 5.321 15 C -0.042 4.042 16 C -0.161 4.161 17 H 0.130 0.870 18 C -0.219 4.219 19 C -0.173 4.173 20 H 0.120 0.880 21 C -0.178 4.178 22 H 0.081 0.919 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.796 2.266 17.684 17.918 hybrid contribution -0.844 -0.396 -0.880 1.282 sum -2.641 1.870 16.804 17.112 Atomic orbital electron populations 1.21741 0.96703 1.00409 1.00271 1.21223 0.94868 1.00102 0.94146 0.91635 1.19107 0.96136 0.95355 0.90367 1.21211 1.34661 1.08280 0.91010 0.92603 1.25025 0.95346 0.95103 0.99096 1.69961 1.39078 1.21240 1.23458 0.86680 0.78847 0.80148 0.82458 1.21391 1.20312 1.20260 1.22139 1.00325 0.94413 0.89590 1.60554 1.19634 1.50529 1.01354 1.21500 1.00288 0.93962 0.88413 1.22477 1.03289 1.00496 0.89840 0.87023 1.23240 0.92507 1.01916 1.04203 1.22361 0.97183 1.01102 0.96660 0.88048 1.21345 1.01530 0.97430 0.97520 0.91870 0.94069 0.94935 0.96776 0.96663 0.93056 0.95923 0.91509 0.84297 0.95615 0.90938 0.88990 0.89105 0.92652 0.92388 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.77 2.54 -90.62 -0.23 -2.00 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.73 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.69 -10.61 6.50 -113.78 -0.74 -11.35 16 15 C 0.09 1.15 5.97 -3.83 -0.02 1.13 16 16 C -0.14 -1.59 5.67 -90.62 -0.51 -2.11 16 17 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.18 -1.77 9.83 -26.69 -0.26 -2.03 16 19 C -0.15 -1.48 6.13 -90.59 -0.56 -2.04 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.12 -0.99 10.19 37.15 0.38 -0.62 16 22 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.52 6.68 -51.92 -0.35 0.17 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.34 4.96 6.98 -39.29 -0.27 4.68 16 31 H 0.03 0.33 7.88 -51.93 -0.41 -0.08 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 34 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 35 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -29.46 300.59 -8.70 -38.16 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.79 Total: -0.15 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.41 Total: -21.52 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.00 Total: -37.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.46 -8.70 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.315 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds