Wall clock time and date at job start Sun Mar 29 2020 21:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 N 1.46904 * 109.47168 * 294.99923 * 13 2 1 15 15 C 1.46899 * 110.99863 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47258 * 179.97438 * 15 14 13 17 17 H 1.09000 * 115.54782 * 330.58803 * 16 15 14 18 18 C 1.53003 * 117.49905 * 116.25042 * 16 15 14 19 19 C 1.52997 * 117.50340 * 184.91241 * 16 15 14 20 20 H 1.09005 * 117.49461 * 359.97438 * 19 16 15 21 21 C 1.52991 * 117.49933 * 145.02093 * 19 16 15 22 22 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 23 23 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 25 25 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 26 26 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46836 * 55.00139 * 13 2 1 29 29 H 1.08999 * 109.47079 * 174.99945 * 13 2 1 30 30 H 1.00901 * 110.99599 * 56.04549 * 14 13 2 31 31 H 1.09001 * 109.46872 * 300.00154 * 15 14 13 32 32 H 1.09005 * 109.47218 * 60.00102 * 15 14 13 33 33 H 1.09001 * 117.49739 * 214.98535 * 18 16 15 34 34 H 1.09002 * 117.49795 * 359.97438 * 18 16 15 35 35 H 1.08997 * 109.46975 * 60.00454 * 21 19 16 36 36 H 1.09005 * 109.46783 * 180.02562 * 21 19 16 37 37 H 1.09004 * 109.47441 * 300.00146 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4457 15 6 2.1258 -0.6265 3.6672 16 6 1.7035 0.1916 4.8892 17 1 1.6094 1.2652 4.7264 18 6 0.7327 -0.4613 5.8752 19 6 2.2029 -0.2744 6.2582 20 1 2.8320 -1.1641 6.2883 21 6 2.5315 0.8023 7.2942 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.6053 -1.7197 -1.2952 26 1 3.1263 -0.7994 -1.2057 27 1 2.9221 -1.8424 -4.7319 28 1 1.6054 -1.7197 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 0.6528 0.1793 2.4753 31 1 1.6921 -1.6245 3.7300 32 1 3.2128 -0.7036 3.6400 33 1 0.0002 0.1830 6.3615 34 1 0.3945 -1.4734 5.6531 35 1 1.6392 1.3937 7.4992 36 1 2.8733 0.3287 8.2146 37 1 3.3167 1.4517 6.9070 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602513866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:53 Heat of formation + Delta-G solvation = -23.959346 kcal Electronic energy + Delta-G solvation = -13663.775772 eV Core-core repulsion = 11439.849802 eV Total energy + Delta-G solvation = -2223.925970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.33794 -37.95414 -35.37230 -33.69596 -29.94382 -28.82724 -27.50722 -25.84183 -23.85067 -21.91674 -21.32386 -20.50084 -18.52964 -17.22145 -16.61726 -15.91878 -15.77727 -15.06017 -15.01502 -14.58941 -14.08528 -13.85937 -13.76008 -13.34424 -13.28972 -12.92689 -12.75382 -12.61045 -12.28163 -12.20698 -12.16144 -11.92933 -11.51208 -11.10470 -11.03717 -10.80285 -10.58106 -10.52713 -9.36168 -8.17108 -6.26545 1.40687 1.43781 1.51426 2.42638 2.81308 3.16164 3.21345 3.86755 3.97295 4.09616 4.21605 4.22484 4.39394 4.45850 4.49213 4.63699 4.76703 4.81904 4.89846 4.92346 4.97293 4.98731 5.03098 5.21842 5.23006 5.32213 5.38766 5.47481 5.47905 5.55502 5.79713 5.89068 6.09581 6.31440 6.51698 6.89221 7.41709 8.94921 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.080118 B = 0.004449 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.398963 B = 6292.706302 C = 6383.500211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.285 1.285 11 H -0.266 1.266 12 H -0.268 1.268 13 C 0.076 3.924 14 N -0.689 5.689 15 C 0.090 3.910 16 C -0.155 4.155 17 H 0.106 0.894 18 C -0.174 4.174 19 C -0.149 4.149 20 H 0.103 0.897 21 C -0.121 4.121 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.066 0.934 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.345 0.655 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 2.924 18.880 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.210 1.210 11 H -0.191 1.191 12 H -0.193 1.193 13 C -0.053 4.053 14 N -0.321 5.321 15 C -0.039 4.039 16 C -0.173 4.173 17 H 0.124 0.876 18 C -0.211 4.211 19 C -0.168 4.168 20 H 0.121 0.879 21 C -0.178 4.178 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.008 0.992 26 H 0.004 0.996 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.165 0.835 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.834 3.235 18.729 19.217 hybrid contribution -0.495 -0.720 -1.147 1.442 sum -3.329 2.514 17.582 18.070 Atomic orbital electron populations 1.21648 0.94880 1.00673 1.01159 1.21025 0.96325 0.98988 0.93173 0.92505 1.19004 0.94191 0.94599 0.92713 1.21623 1.34572 1.08629 0.92069 0.92018 1.25976 0.95230 0.96113 1.02718 1.70102 1.40269 1.22976 1.24361 0.85535 0.78974 0.78734 0.78030 1.21014 1.19102 1.19278 1.21844 0.99550 0.94249 0.89655 1.60478 1.20174 1.50291 1.01169 1.21509 0.99930 0.94371 0.88117 1.22324 1.05363 0.99896 0.89744 0.87578 1.23303 0.92753 1.01995 1.03015 1.22471 0.97262 1.01398 0.95640 0.87858 1.21365 1.01758 0.97108 0.97556 0.93492 0.94102 0.91471 0.99193 0.99576 0.92923 0.95946 0.92565 0.83549 0.95258 0.91560 0.87878 0.88924 0.92158 0.91171 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.77 71.98 0.63 -4.05 16 2 C -0.08 -3.20 2.54 -10.80 -0.03 -3.23 16 3 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.49 8.41 25.60 0.22 -30.28 16 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.08 2.73 5.14 86.30 0.44 3.18 16 14 N -0.69 -20.35 6.50 -513.89 -3.34 -23.69 16 15 C 0.09 2.24 5.97 86.30 0.51 2.75 16 16 C -0.15 -3.20 5.67 -10.79 -0.06 -3.26 16 17 H 0.11 2.33 8.14 -2.39 -0.02 2.32 16 18 C -0.17 -2.98 9.83 30.62 0.30 -2.68 16 19 C -0.15 -2.56 6.13 -10.77 -0.07 -2.63 16 20 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 21 C -0.12 -1.72 10.19 71.98 0.73 -0.99 16 22 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 2.01 6.68 -2.38 -0.02 1.99 16 25 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.35 9.39 6.98 -89.69 -0.63 8.77 16 31 H 0.03 0.72 7.88 -2.39 -0.02 0.70 16 32 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.10 1.55 8.05 -2.39 -0.02 1.53 16 34 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 35 H 0.06 0.80 7.90 -2.39 -0.02 0.78 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -63.09 300.59 2.63 -60.46 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.38 Total: 13.02 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 3.28 Total: -39.01 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -3.05 Total: -81.40 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.09 2.63 -60.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.499 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds