Wall clock time and date at job start Sun Mar 29 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 H 1.08000 * 119.99498 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00441 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46855 * 119.99990 * 9 7 5 12 12 H 1.48496 * 109.46967 * 239.99783 * 9 7 5 13 13 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 14 14 N 1.46900 * 109.46619 * 294.99903 * 13 2 1 15 15 C 1.46907 * 110.99641 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.46793 * 179.97438 * 15 14 13 17 17 H 1.08998 * 115.55460 * 29.42069 * 16 15 14 18 18 C 1.53001 * 117.49933 * 243.74419 * 16 15 14 19 19 C 1.53005 * 117.49627 * 175.08659 * 16 15 14 20 20 H 1.08997 * 117.49919 * 214.98251 * 19 16 15 21 21 C 1.53004 * 117.49572 * 359.97438 * 19 16 15 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 26 26 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 27 27 H 0.97002 * 119.99729 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47059 * 54.99596 * 13 2 1 29 29 H 1.08996 * 109.47073 * 174.99688 * 13 2 1 30 30 H 1.00900 * 111.00289 * 56.04740 * 14 13 2 31 31 H 1.08997 * 109.46942 * 299.99950 * 15 14 13 32 32 H 1.09003 * 109.47142 * 59.99974 * 15 14 13 33 33 H 1.09000 * 117.49805 * 0.02562 * 18 16 15 34 34 H 1.08999 * 117.50048 * 145.02249 * 18 16 15 35 35 H 1.09004 * 109.46843 * 60.00524 * 21 19 16 36 36 H 1.09003 * 109.46602 * 179.97438 * 21 19 16 37 37 H 1.08995 * 109.47364 * 299.99646 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8512 9 14 1.4987 0.5628 -5.2497 10 1 0.7433 1.7750 -4.8433 11 1 2.7170 0.9665 -5.9966 12 1 0.6440 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6672 16 6 1.7024 0.1910 4.8892 17 1 0.7834 0.7659 4.7754 18 6 2.8117 0.7958 5.7522 19 6 2.0022 -0.3957 6.2701 20 1 1.2805 -0.2065 7.0647 21 6 2.7008 -1.7559 6.3232 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7996 -1.2056 26 1 1.6053 -1.7198 -1.2952 27 1 2.9227 -1.8423 -4.7318 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2055 30 1 0.6529 0.1793 2.4753 31 1 1.6904 -1.6249 3.7296 32 1 3.2117 -0.7051 3.6405 33 1 3.8423 0.6111 5.4492 34 1 2.6223 1.7684 6.2063 35 1 3.6670 -1.6879 5.8233 36 1 2.8498 -2.0474 7.3629 37 1 2.0836 -2.5012 5.8215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:55 Heat of formation + Delta-G solvation = -5.875246 kcal Electronic energy + Delta-G solvation = -13764.986834 eV Core-core repulsion = 11541.845050 eV Total energy + Delta-G solvation = -2223.141784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.47264 -36.48633 -33.58539 -31.78572 -28.72306 -27.18464 -26.36609 -24.30445 -22.06337 -21.57940 -19.73736 -18.73476 -16.39032 -16.03910 -15.43526 -14.58621 -14.36885 -13.89258 -13.38991 -13.24220 -12.96983 -12.49473 -12.20782 -12.08745 -11.80295 -11.58166 -11.38025 -11.09475 -10.85062 -10.73701 -10.31336 -10.19529 -9.99310 -9.89451 -9.66047 -9.11360 -8.91912 -8.31026 -8.06172 -5.95512 -3.96488 3.33752 3.41246 3.45544 3.65428 4.38606 4.51463 4.60868 4.81538 5.00987 5.17598 5.39447 5.40423 5.52115 5.64638 5.70504 5.73458 5.76581 5.83126 5.88481 5.92525 6.08895 6.14822 6.24530 6.29770 6.50682 6.59392 6.98709 7.13708 7.20610 7.43001 7.70573 7.73512 7.89177 8.05120 8.49151 9.10176 9.66918 11.16124 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071950 B = 0.004685 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.063229 B = 5975.714257 C = 6120.904636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.689 5.689 15 C 0.089 3.911 16 C -0.142 4.142 17 H 0.104 0.896 18 C -0.171 4.171 19 C -0.159 4.159 20 H 0.100 0.900 21 C -0.123 4.123 22 H 0.032 0.968 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.337 0.663 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 1.175 17.449 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.321 5.321 15 C -0.040 4.040 16 C -0.160 4.160 17 H 0.122 0.878 18 C -0.208 4.208 19 C -0.178 4.178 20 H 0.119 0.881 21 C -0.180 4.180 22 H 0.051 0.949 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.176 1.480 17.278 17.381 hybrid contribution -0.829 -0.288 -0.868 1.234 sum -2.004 1.191 16.410 16.575 Atomic orbital electron populations 1.21741 0.96711 1.00408 1.00271 1.21221 0.94861 1.00099 0.94140 0.91641 1.19122 0.96146 0.95377 0.90408 1.21286 1.34502 1.08226 0.90982 0.92497 1.25023 0.95358 0.95099 0.99107 1.69980 1.39209 1.21298 1.23235 0.86573 0.78252 0.80131 0.83283 1.19738 1.21087 1.21131 1.22136 1.00303 0.94406 0.89605 1.60568 1.19497 1.50601 1.01393 1.21470 1.00096 0.94203 0.88228 1.22350 1.00162 1.02608 0.90906 0.87811 1.23125 0.96854 0.96997 1.03791 1.22401 1.03067 0.94920 0.97412 0.88147 1.21338 1.00018 0.95043 1.01593 0.94949 0.91868 0.94051 0.96661 0.96755 0.93178 0.95910 0.91559 0.84424 0.95292 0.91196 0.88772 0.89119 0.92412 0.92431 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.69 -10.61 6.50 -113.77 -0.74 -11.35 16 15 C 0.09 1.17 5.05 -3.82 -0.02 1.15 16 16 C -0.14 -1.59 5.95 -90.62 -0.54 -2.13 16 17 H 0.10 1.16 8.13 -51.93 -0.42 0.74 16 18 C -0.17 -1.74 9.83 -26.69 -0.26 -2.00 16 19 C -0.16 -1.53 6.41 -90.58 -0.58 -2.11 16 20 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.12 -1.09 9.20 37.16 0.34 -0.75 16 22 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 23 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.34 4.89 6.97 -39.29 -0.27 4.62 16 31 H 0.03 0.38 7.77 -51.93 -0.40 -0.03 16 32 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 33 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.53 7.90 -51.93 -0.41 0.11 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.54 7.84 -51.93 -0.41 0.13 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -29.59 298.55 -8.78 -38.37 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.76 Total: -0.21 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -1.49 Total: -21.66 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.00 Total: -37.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.59 -8.78 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.495 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds