Wall clock time and date at job start Sun Mar 29 2020 21:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47137 * 89.99320 * 9 7 5 11 11 H 1.48501 * 109.47453 * 209.99503 * 9 7 5 12 12 H 1.48500 * 109.46737 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 H 1.08995 * 115.54408 * 9.41821 * 15 14 13 17 17 C 1.52994 * 117.49843 * 223.75108 * 15 14 13 18 18 C 1.53001 * 117.49950 * 155.09176 * 15 14 13 19 19 C 1.52998 * 117.49528 * 214.98170 * 18 15 14 20 20 C 1.53005 * 117.49675 * 0.02562 * 18 15 14 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 25 25 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 26 26 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 28 28 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 29 29 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 30 30 H 1.09006 * 117.50283 * 0.02562 * 17 15 14 31 31 H 1.09002 * 117.49687 * 145.02206 * 17 15 14 32 32 H 1.09001 * 109.47257 * 59.99879 * 19 18 15 33 33 H 1.09007 * 109.46700 * 179.97438 * 19 18 15 34 34 H 1.08995 * 109.47076 * 299.99608 * 19 18 15 35 35 H 1.09000 * 109.47303 * 60.00217 * 20 18 15 36 36 H 1.09003 * 109.46531 * 180.02562 * 20 18 15 37 37 H 1.08997 * 109.47047 * 299.99821 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3710 -6.3890 12 1 0.2282 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 1 2.8086 -1.4618 3.5134 17 6 1.1513 -0.7190 4.8439 18 6 2.3400 0.2434 4.9070 19 6 3.4984 -0.1248 5.8361 20 6 2.0451 1.7393 4.7795 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1263 -0.7996 -1.2055 25 1 1.6054 -1.7198 -1.2952 26 1 2.9228 -1.8423 -4.7318 27 1 1.6054 -1.7199 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 0.6528 0.1793 2.4753 30 1 0.1594 -0.2867 4.7116 31 1 1.1951 -1.6140 5.4646 32 1 4.4368 -0.0763 5.2837 33 1 3.5317 0.5760 6.6705 34 1 3.3522 -1.1358 6.2161 35 1 0.9997 1.8816 4.5057 36 1 2.2416 2.2307 5.7325 37 1 2.6845 2.1714 4.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602524722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:28 Heat of formation + Delta-G solvation = -5.196090 kcal Electronic energy + Delta-G solvation = -13981.311157 eV Core-core repulsion = 11758.198823 eV Total energy + Delta-G solvation = -2223.112334 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.74790 -36.06961 -33.02123 -31.38832 -28.59713 -27.46600 -26.78878 -25.12567 -22.48420 -21.44293 -19.19585 -18.52184 -16.42208 -15.41209 -15.23670 -14.51631 -14.23531 -13.73508 -13.40774 -13.10624 -12.63604 -12.40427 -12.30740 -12.03519 -11.85395 -11.67376 -11.39308 -11.11247 -10.88206 -10.78201 -10.42823 -10.32753 -10.18417 -9.70446 -9.61633 -9.11455 -8.92118 -8.31214 -7.89728 -5.96002 -3.97147 3.34433 3.40594 3.43795 3.78163 4.28991 4.50465 4.84272 4.86622 5.08012 5.20682 5.39825 5.56038 5.66409 5.73708 5.77878 5.81955 5.88276 5.91110 5.99911 6.06541 6.07149 6.21047 6.29309 6.44779 6.48987 6.57799 6.98237 7.12158 7.18886 7.42337 7.66433 7.71944 7.87912 8.04317 8.48117 9.09201 9.66219 11.15575 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.061688 B = 0.005212 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.791713 B = 5371.198552 C = 5466.363525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.656 5.656 15 C 0.036 3.964 16 H 0.105 0.895 17 C -0.204 4.204 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.101 4.101 21 H 0.063 0.937 22 H 0.030 0.970 23 H 0.041 0.959 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.339 0.661 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 2.145 16.320 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.286 5.286 15 C -0.076 4.076 16 H 0.123 0.877 17 C -0.243 4.243 18 C -0.126 4.126 19 C -0.170 4.170 20 C -0.158 4.158 21 H 0.082 0.918 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.167 2.454 16.115 16.342 hybrid contribution -0.860 -0.389 -0.858 1.275 sum -2.027 2.065 15.257 15.529 Atomic orbital electron populations 1.21743 0.96707 1.00446 1.00233 1.21230 0.94844 1.00123 0.94159 0.91631 1.19111 0.96156 0.95371 0.90340 1.21240 1.34612 1.08243 0.90990 0.92570 1.25019 0.95356 0.95074 0.99091 1.69968 1.39147 1.21230 1.23365 0.86627 0.78924 0.79810 0.82840 1.20714 1.21331 1.19919 1.22191 1.00358 0.94501 0.89217 1.60281 1.19165 1.48800 1.00343 1.22589 1.00994 0.98048 0.85923 0.87742 1.23738 0.95041 1.01632 1.03921 1.21781 0.97068 0.93987 0.99764 1.21332 0.96880 1.00778 0.98055 1.21132 1.01611 0.92254 1.00824 0.91830 0.95056 0.94002 0.96639 0.96736 0.93112 0.95666 0.91384 0.84058 0.89000 0.89220 0.92192 0.92382 0.92829 0.92830 0.93378 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.07 1.16 5.00 -3.82 -0.02 1.15 16 14 N -0.66 -9.95 6.15 -106.72 -0.66 -10.61 16 15 C 0.04 0.47 6.01 -67.71 -0.41 0.07 16 16 H 0.10 1.40 7.90 -51.93 -0.41 0.99 16 17 C -0.20 -2.30 9.52 -26.70 -0.25 -2.55 16 18 C -0.12 -1.44 2.70 -154.47 -0.42 -1.86 16 19 C -0.11 -1.12 9.85 37.16 0.37 -0.75 16 20 C -0.10 -1.16 9.31 37.16 0.35 -0.81 16 21 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 22 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.34 4.91 6.77 -39.29 -0.27 4.65 16 30 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 31 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 34 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 35 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 36 H 0.05 0.48 7.92 -51.93 -0.41 0.07 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -29.25 298.80 -7.99 -37.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.75 Total: 0.10 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.80 Total: -21.61 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.08 Total: -37.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.25 -7.99 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602524722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.041 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds