Wall clock time and date at job start Sun Mar 29 2020 21:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47048 * 240.00229 * 2 1 3 5 5 C 1.50703 * 109.47207 * 65.00016 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.52995 * 109.47078 * 120.00448 * 2 1 3 14 14 N 1.46898 * 109.47097 * 294.99862 * 13 2 1 15 15 C 1.46899 * 111.00079 * 180.02562 * 14 13 2 16 16 H 1.08997 * 115.55326 * 350.67163 * 15 14 13 17 17 C 1.53007 * 117.49819 * 136.37853 * 15 14 13 18 18 C 1.53002 * 60.00014 * 107.48970 * 17 15 14 19 19 C 1.53004 * 117.49876 * 252.51244 * 18 17 15 20 20 C 1.52995 * 117.49892 * 107.48865 * 18 17 15 21 21 H 1.08992 * 109.47235 * 299.99985 * 1 2 3 22 22 H 1.09001 * 109.47043 * 60.00307 * 1 2 3 23 23 H 1.09005 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47493 * 305.00016 * 4 2 1 25 25 H 1.08998 * 109.47006 * 184.99979 * 4 2 1 26 26 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 27 27 H 1.09000 * 109.47350 * 55.00088 * 13 2 1 28 28 H 1.09000 * 109.47309 * 175.00058 * 13 2 1 29 29 H 1.00903 * 110.99838 * 56.04734 * 14 13 2 30 30 H 1.08995 * 117.49753 * 214.97978 * 17 15 14 31 31 H 1.09001 * 117.49940 * 0.02562 * 17 15 14 32 32 H 1.08996 * 109.47230 * 128.62368 * 19 18 17 33 33 H 1.08999 * 109.46957 * 248.62309 * 19 18 17 34 34 H 1.08996 * 109.46990 * 8.61994 * 19 18 17 35 35 H 1.08997 * 109.47353 * 351.38002 * 20 18 17 36 36 H 1.09005 * 109.46877 * 111.38087 * 20 18 17 37 37 H 1.09000 * 109.47375 * 231.37441 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6755 -1.5192 -3.8513 9 14 1.4988 0.5630 -5.2496 10 1 0.7423 1.7746 -4.8434 11 1 0.6441 -0.2854 -6.1185 12 1 2.7171 0.9669 -5.9965 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6670 16 1 2.5367 -1.6268 3.5292 17 6 2.7536 0.2523 4.7507 18 6 1.3629 -0.3490 4.9639 19 6 0.1643 0.5991 4.8893 20 6 1.2357 -1.4961 5.9682 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6054 -1.7198 -1.2953 25 1 3.1263 -0.7994 -1.2056 26 1 2.9321 -2.0202 -3.0613 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 0.6528 0.1791 2.4752 30 1 3.5778 -0.1695 5.3258 31 1 2.8143 1.3233 4.5574 32 1 -0.5768 0.1942 4.2002 33 1 -0.2789 0.7031 5.8796 34 1 0.4949 1.5754 4.5348 35 1 2.2292 -1.8166 6.2815 36 1 0.6722 -1.1571 6.8376 37 1 0.7148 -2.3319 5.5011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602524726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:33 Heat of formation + Delta-G solvation = -9.416952 kcal Electronic energy + Delta-G solvation = -14031.516606 eV Core-core repulsion = 11808.221242 eV Total energy + Delta-G solvation = -2223.295364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84811 -36.20604 -33.24333 -31.33542 -28.76587 -27.64847 -26.49158 -25.13176 -22.54402 -21.14858 -19.45729 -18.75765 -16.72743 -15.78084 -15.33052 -14.40134 -13.90909 -13.76845 -13.47385 -13.24179 -12.98961 -12.68533 -12.40647 -12.15545 -11.74333 -11.56717 -11.42472 -11.25865 -11.05248 -10.71122 -10.43601 -10.23838 -10.08221 -9.80779 -9.67743 -9.37878 -8.44698 -8.27132 -8.03495 -6.30422 -3.98348 3.46693 3.50798 3.63993 3.72239 4.19149 4.59016 4.69688 4.82252 4.99579 5.23137 5.46049 5.47745 5.48826 5.67007 5.68939 5.75198 5.81206 5.82892 5.85268 5.95292 5.98766 6.05286 6.19418 6.27785 6.39401 6.48038 6.85080 7.02865 7.05039 7.34241 7.45078 7.57665 7.65687 8.29407 8.53556 8.95109 9.73255 11.10169 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067132 B = 0.005240 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.989606 B = 5342.303346 C = 5507.541946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.067 0.933 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.073 2.927 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.065 3.935 14 N -0.659 5.659 15 C 0.028 3.972 16 H 0.095 0.905 17 C -0.163 4.163 18 C -0.148 4.148 19 C -0.113 4.113 20 C -0.113 4.113 21 H 0.032 0.968 22 H 0.064 0.936 23 H 0.040 0.960 24 H 0.005 0.995 25 H 0.006 0.994 26 H 0.268 0.732 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.340 0.660 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 1.757 16.955 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.902 3.098 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.063 4.063 14 N -0.290 5.290 15 C -0.083 4.083 16 H 0.113 0.887 17 C -0.201 4.201 18 C -0.149 4.149 19 C -0.170 4.170 20 C -0.171 4.171 21 H 0.051 0.949 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.971 2.199 15.242 15.684 hybrid contribution -0.594 -0.817 1.722 1.996 sum -3.565 1.382 16.964 17.389 Atomic orbital electron populations 1.21733 0.96486 1.00437 1.00418 1.21091 0.95001 1.00056 0.93534 0.91485 1.19246 0.95386 0.95415 0.92269 1.22090 1.38594 1.10262 0.92228 0.93109 1.25823 0.94728 0.97155 1.01390 1.70719 1.36220 1.14941 1.33537 0.83496 0.76246 0.75034 0.75067 1.21541 1.21468 1.21412 1.22194 1.00323 0.94424 0.89388 1.60313 1.19429 1.49032 1.00269 1.22552 1.02936 0.96736 0.86117 0.88707 1.23392 0.94479 1.00251 1.02025 1.21884 0.94135 0.99923 0.98973 1.21245 0.95916 0.98420 1.01461 1.21345 1.01675 0.96515 0.97544 0.94900 0.91661 0.94080 0.97676 0.97564 0.92136 0.95786 0.91454 0.83811 0.89236 0.88442 0.92568 0.92348 0.91788 0.92556 0.92256 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.24 16 2 C -0.08 -1.64 2.55 -90.62 -0.23 -1.87 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -17.01 8.41 -34.44 -0.29 -17.30 16 6 H 0.05 1.44 7.05 -52.49 -0.37 1.07 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.56 13.65 55.43 0.76 -27.80 16 9 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.07 1.18 5.00 -3.83 -0.02 1.16 16 14 N -0.66 -10.21 6.56 -106.72 -0.70 -10.91 16 15 C 0.03 0.37 5.96 -67.71 -0.40 -0.03 16 16 H 0.10 1.28 7.90 -51.93 -0.41 0.87 16 17 C -0.16 -1.93 9.75 -26.73 -0.26 -2.19 16 18 C -0.15 -1.64 2.70 -154.50 -0.42 -2.06 16 19 C -0.11 -1.18 8.79 37.16 0.33 -0.85 16 20 C -0.11 -1.06 9.85 37.16 0.37 -0.69 16 21 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 22 H 0.06 1.36 6.95 -51.93 -0.36 1.00 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 25 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 26 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.34 5.03 5.45 -39.29 -0.21 4.82 16 30 H 0.09 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.10 1.21 8.05 -51.93 -0.42 0.79 16 32 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 33 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 34 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 35 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 36 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 295.73 15.07 4.46 4.46 Total: -1.00 -30.21 295.73 -7.99 -38.20 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.61 Total: 0.88 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -0.80 Total: -25.55 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.06 Total: -38.71 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.21 -7.99 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602524726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.779 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds