Wall clock time and date at job start Sun Mar 29 2020 21:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47091 * 2 1 4 4 C 1.53002 * 109.47048 * 240.00229 * 2 1 3 5 5 C 1.50703 * 109.47207 * 65.00016 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.52995 * 109.47078 * 120.00448 * 2 1 3 14 14 N 1.46898 * 109.47097 * 294.99862 * 13 2 1 15 15 C 1.46899 * 111.00079 * 180.02562 * 14 13 2 16 16 H 1.08997 * 115.55326 * 350.67163 * 15 14 13 17 17 C 1.53007 * 117.49819 * 136.37853 * 15 14 13 18 18 C 1.53002 * 60.00014 * 107.48970 * 17 15 14 19 19 C 1.53004 * 117.49876 * 252.51244 * 18 17 15 20 20 C 1.52995 * 117.49892 * 107.48865 * 18 17 15 21 21 H 1.08992 * 109.47235 * 299.99985 * 1 2 3 22 22 H 1.09001 * 109.47043 * 60.00307 * 1 2 3 23 23 H 1.09005 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47493 * 305.00016 * 4 2 1 25 25 H 1.08998 * 109.47006 * 184.99979 * 4 2 1 26 26 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 27 27 H 1.09000 * 109.47350 * 55.00088 * 13 2 1 28 28 H 1.09000 * 109.47309 * 175.00058 * 13 2 1 29 29 H 1.00903 * 110.99838 * 56.04734 * 14 13 2 30 30 H 1.08995 * 117.49753 * 214.97978 * 17 15 14 31 31 H 1.09001 * 117.49940 * 0.02562 * 17 15 14 32 32 H 1.08996 * 109.47230 * 128.62368 * 19 18 17 33 33 H 1.08999 * 109.46957 * 248.62309 * 19 18 17 34 34 H 1.08996 * 109.46990 * 8.61994 * 19 18 17 35 35 H 1.08997 * 109.47353 * 351.38002 * 20 18 17 36 36 H 1.09005 * 109.46877 * 111.38087 * 20 18 17 37 37 H 1.09000 * 109.47375 * 231.37441 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9924 -0.4021 -3.7283 8 7 2.6755 -1.5192 -3.8513 9 14 1.4988 0.5630 -5.2496 10 1 0.7423 1.7746 -4.8434 11 1 0.6441 -0.2854 -6.1185 12 1 2.7171 0.9669 -5.9965 13 6 2.0400 -0.7213 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6670 16 1 2.5367 -1.6268 3.5292 17 6 2.7536 0.2523 4.7507 18 6 1.3629 -0.3490 4.9639 19 6 0.1643 0.5991 4.8893 20 6 1.2357 -1.4961 5.9682 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6054 -1.7198 -1.2953 25 1 3.1263 -0.7994 -1.2056 26 1 2.9321 -2.0202 -3.0613 27 1 1.6054 -1.7199 1.2950 28 1 3.1263 -0.7996 1.2055 29 1 0.6528 0.1791 2.4752 30 1 3.5778 -0.1695 5.3258 31 1 2.8143 1.3233 4.5574 32 1 -0.5768 0.1942 4.2002 33 1 -0.2789 0.7031 5.8796 34 1 0.4949 1.5754 4.5348 35 1 2.2292 -1.8166 6.2815 36 1 0.6722 -1.1571 6.8376 37 1 0.7148 -2.3319 5.5011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602524726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:33 Heat of formation + Delta-G solvation = -27.355244 kcal Electronic energy + Delta-G solvation = -14032.294469 eV Core-core repulsion = 11808.221242 eV Total energy + Delta-G solvation = -2224.073227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89135 -37.82937 -35.16436 -32.95470 -29.74915 -28.48936 -28.37170 -26.76654 -24.52122 -22.22689 -21.04134 -19.84204 -18.89064 -16.98452 -16.53579 -15.88008 -15.64339 -15.23862 -14.95266 -14.46041 -14.31160 -13.80176 -13.57254 -13.41789 -13.15339 -13.09376 -12.94512 -12.58326 -12.52410 -12.08735 -11.93469 -11.90906 -11.72159 -11.40129 -11.30685 -10.68640 -10.53251 -10.43462 -9.23482 -8.66310 -6.35262 1.52304 1.62051 1.78319 2.57106 2.78259 3.02437 3.18302 3.80785 3.91380 4.01572 4.13247 4.19497 4.27839 4.29685 4.52324 4.65164 4.73188 4.74985 4.87930 4.89514 4.97747 5.01167 5.03413 5.05502 5.11067 5.21640 5.25923 5.29038 5.45262 5.46610 5.61415 6.00645 6.12008 6.21874 6.40572 6.61381 7.45866 8.74447 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067132 B = 0.005240 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.989606 B = 5342.303346 C = 5507.541946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.055 0.945 4 C 0.016 3.984 5 C -0.605 4.605 6 H 0.052 0.948 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.122 2.878 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.080 3.920 14 N -0.659 5.659 15 C 0.001 3.999 16 H 0.092 0.908 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.115 4.115 20 C -0.113 4.113 21 H 0.067 0.933 22 H 0.046 0.954 23 H 0.041 0.959 24 H -0.013 1.013 25 H -0.017 1.017 26 H 0.254 0.746 27 H 0.024 0.976 28 H 0.055 0.945 29 H 0.345 0.655 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 2.611 18.213 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.021 4.021 5 C -0.643 4.643 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.943 3.057 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.049 4.049 14 N -0.291 5.291 15 C -0.109 4.109 16 H 0.109 0.891 17 C -0.199 4.199 18 C -0.133 4.133 19 C -0.173 4.173 20 C -0.171 4.171 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.005 0.995 25 H 0.001 0.999 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.167 0.833 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.062 3.055 16.537 17.301 hybrid contribution -0.235 -1.092 1.408 1.797 sum -4.297 1.963 17.945 18.557 Atomic orbital electron populations 1.21638 0.94718 1.00736 1.01197 1.20914 0.96420 0.98837 0.92759 0.92653 1.19184 0.93841 0.94841 0.94256 1.22474 1.38059 1.10376 0.93346 0.92926 1.27416 0.94010 0.97263 1.05226 1.70862 1.38117 1.16230 1.32837 0.82880 0.76584 0.74530 0.71699 1.19353 1.20460 1.20577 1.21865 0.99453 0.94252 0.89361 1.60234 1.19818 1.48880 1.00149 1.22616 1.05272 0.96960 0.86080 0.89063 1.23442 0.95701 0.99660 1.01081 1.22013 0.93936 1.00120 0.97194 1.21292 0.95605 0.97768 1.02595 1.21380 1.02391 0.95768 0.97515 0.91451 0.93490 0.93995 0.99458 0.99917 0.93671 0.95733 0.92606 0.83339 0.87849 0.89106 0.92549 0.90483 0.92512 0.91977 0.90682 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.77 71.98 0.63 -4.07 16 2 C -0.07 -2.98 2.55 -10.79 -0.03 -3.00 16 3 H 0.05 2.46 8.14 -2.39 -0.02 2.45 16 4 C 0.02 0.87 3.76 29.85 0.11 0.98 16 5 C -0.60 -35.08 8.41 25.60 0.22 -34.86 16 6 H 0.05 2.98 7.05 -2.91 -0.02 2.96 16 7 C -0.04 -2.52 5.46 84.65 0.46 -2.05 16 8 N -0.94 -59.82 13.65 21.45 0.29 -59.52 16 9 Si 1.12 51.45 29.90 68.60 2.05 53.50 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.08 2.88 5.00 86.30 0.43 3.31 16 14 N -0.66 -19.71 6.56 -491.57 -3.22 -22.93 16 15 C 0.00 0.03 5.96 44.92 0.27 0.30 16 16 H 0.09 2.39 7.90 -2.39 -0.02 2.37 16 17 C -0.16 -3.51 9.75 30.60 0.30 -3.21 16 18 C -0.13 -2.61 2.70 -52.18 -0.14 -2.75 16 19 C -0.12 -2.10 8.79 71.98 0.63 -1.47 16 20 C -0.11 -1.80 9.85 71.98 0.71 -1.09 16 21 H 0.07 2.04 6.68 -2.39 -0.02 2.03 16 22 H 0.05 1.91 6.95 -2.39 -0.02 1.90 16 23 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 24 H -0.01 -0.73 8.01 -2.38 -0.02 -0.75 16 25 H -0.02 -1.00 8.01 -2.39 -0.02 -1.02 16 26 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.34 9.56 5.45 -89.69 -0.49 9.07 16 30 H 0.10 1.95 8.05 -2.39 -0.02 1.93 16 31 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 32 H 0.06 1.03 7.59 -2.39 -0.02 1.01 16 33 H 0.08 1.12 7.92 -2.39 -0.02 1.10 16 34 H 0.06 1.12 7.90 -2.39 -0.02 1.10 16 35 H 0.06 0.92 7.90 -2.39 -0.02 0.90 16 36 H 0.07 0.97 7.92 -2.38 -0.02 0.96 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -65.03 295.73 3.33 -61.69 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.62 Total: 15.20 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 3.59 Total: -47.93 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.93 Total: -82.46 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -65.03 3.33 -61.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602524726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.335 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds