Wall clock time and date at job start Sun Mar 29 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.53004 * 109.47082 * 240.00266 * 2 1 3 14 14 N 1.46899 * 109.47039 * 64.99745 * 13 2 1 15 15 C 1.46907 * 110.99495 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.46676 * 180.02562 * 15 14 13 17 17 C 1.53779 * 113.61328 * 274.13498 * 16 15 14 18 18 C 1.53954 * 87.02018 * 220.05030 * 17 16 15 19 19 C 1.53780 * 87.10975 * 25.36529 * 18 17 16 20 20 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 21 21 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 22 22 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 24 24 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 25 25 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 26 26 H 1.08995 * 109.46860 * 185.00644 * 13 2 1 27 27 H 1.09001 * 109.46604 * 304.99920 * 13 2 1 28 28 H 1.00896 * 111.00476 * 303.95134 * 14 13 2 29 29 H 1.09003 * 109.47363 * 300.00360 * 15 14 13 30 30 H 1.09000 * 109.46789 * 60.00422 * 15 14 13 31 31 H 1.08997 * 112.85069 * 45.33623 * 16 15 14 32 32 H 1.09001 * 113.61802 * 334.57155 * 17 16 15 33 33 H 1.09001 * 113.61457 * 105.47542 * 17 16 15 34 34 H 1.09002 * 113.53668 * 270.81240 * 18 17 16 35 35 H 1.09003 * 113.66711 * 139.93556 * 18 17 16 36 36 H 1.08999 * 113.61208 * 220.08888 * 19 18 17 37 37 H 1.09001 * 113.69313 * 89.20056 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.0197 0.6701 5.3095 11 1 1.9946 -0.1368 6.4621 12 1 2.0919 1.9238 5.1865 13 6 2.0400 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.1247 -0.6271 -3.6673 16 6 1.7024 0.1910 -4.8892 17 6 0.2863 -0.1374 -5.3910 18 6 0.8518 -0.0204 -6.8181 19 6 2.2232 -0.3763 -6.2203 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1263 -0.7995 1.2055 24 1 1.6053 -1.7198 1.2950 25 1 2.9380 -2.0168 3.0608 26 1 3.1263 -0.7995 -1.2056 27 1 1.6054 -1.7198 -1.2952 28 1 0.6528 0.1793 -2.4754 29 1 3.2116 -0.7051 -3.6406 30 1 1.6903 -1.6248 -3.7297 31 1 1.8860 1.2585 -4.7679 32 1 -0.0457 -1.1434 -5.1339 33 1 -0.4512 0.6276 -5.1485 34 1 0.8015 0.9896 -7.2248 35 1 0.4659 -0.7739 -7.5048 36 1 3.0470 0.1962 -6.6464 37 1 2.4232 -1.4474 -6.1900 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602526652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:18 Heat of formation + Delta-G solvation = -14.743548 kcal Electronic energy + Delta-G solvation = -13875.685533 eV Core-core repulsion = 11652.159190 eV Total energy + Delta-G solvation = -2223.526343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.11277 -36.71322 -33.90572 -31.89044 -27.93166 -26.45521 -25.79158 -24.74085 -22.63483 -21.83673 -19.60256 -19.05691 -16.72656 -16.17933 -15.34117 -14.81102 -14.41860 -13.69813 -13.67767 -13.37087 -12.81783 -12.60323 -12.47936 -11.89800 -11.75557 -11.59297 -11.25629 -11.00774 -10.71267 -10.65634 -10.50566 -10.27851 -10.09092 -10.00051 -9.81233 -9.39463 -8.44172 -8.26942 -8.14691 -6.29608 -3.97461 3.47174 3.49398 3.67838 4.26945 4.49592 4.58736 4.60509 4.70075 4.85905 5.33404 5.44133 5.46969 5.54650 5.57556 5.66552 5.70058 5.74137 5.77733 5.86199 5.93121 6.00041 6.13547 6.20279 6.37221 6.43498 6.50001 6.85936 7.04786 7.06827 7.34519 7.46255 7.61212 7.69547 8.30249 8.53431 8.95594 9.74017 11.10847 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.082982 B = 0.004711 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.340290 B = 5941.737696 C = 6111.749447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.690 5.690 15 C 0.067 3.933 16 C -0.107 4.107 17 C -0.142 4.142 18 C -0.142 4.142 19 C -0.137 4.137 20 H 0.064 0.936 21 H 0.033 0.967 22 H 0.039 0.961 23 H 0.006 0.994 24 H 0.005 0.995 25 H 0.268 0.732 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.338 0.662 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 2.059 -17.926 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.215 1.215 13 C -0.066 4.066 14 N -0.321 5.321 15 C -0.063 4.063 16 C -0.126 4.126 17 C -0.179 4.179 18 C -0.179 4.179 19 C -0.175 4.175 20 H 0.083 0.917 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.156 0.844 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.811 2.490 -16.229 16.658 hybrid contribution -0.687 -0.830 -1.745 2.051 sum -3.498 1.660 -17.974 18.386 Atomic orbital electron populations 1.21726 0.96498 1.00377 1.00428 1.21086 0.95002 1.00007 0.93558 0.91526 1.19241 0.95348 0.95404 0.92318 1.22041 1.38682 1.10212 0.92280 0.93208 1.25831 0.94715 0.97172 1.01385 1.70777 1.35930 1.15101 1.33483 0.83565 0.75999 0.75187 0.75640 1.21529 1.20867 1.21472 1.22143 1.00194 0.94397 0.89845 1.60574 1.19601 1.50458 1.01457 1.21946 1.00343 0.94606 0.89395 1.22590 0.95936 1.00856 0.93213 1.23034 0.96911 1.01734 0.96247 1.22817 0.96960 1.01568 0.96564 1.22909 0.97038 1.01108 0.96404 0.91738 0.94798 0.94166 0.97614 0.97716 0.92200 0.91652 0.96051 0.84385 0.91281 0.95689 0.88455 0.90446 0.91488 0.90304 0.91743 0.91545 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.77 37.16 0.33 -2.25 16 2 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -17.10 8.41 -34.44 -0.29 -17.39 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.62 13.65 55.43 0.76 -27.86 16 9 Si 1.07 25.75 29.90 -169.99 -5.08 20.66 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.61 6.50 -113.77 -0.74 -11.35 16 15 C 0.07 0.86 5.51 -3.82 -0.02 0.84 16 16 C -0.11 -1.15 3.89 -89.81 -0.35 -1.50 16 17 C -0.14 -1.37 7.65 -25.83 -0.20 -1.57 16 18 C -0.14 -1.20 8.09 -25.83 -0.21 -1.41 16 19 C -0.14 -1.25 7.65 -25.92 -0.20 -1.44 16 20 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 21 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 24 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 25 H 0.27 8.34 7.22 -40.82 -0.29 8.04 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.34 4.95 6.98 -39.29 -0.27 4.68 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -30.28 294.46 -8.76 -39.04 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.74 Total: 0.03 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -1.39 Total: -24.96 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.02 Total: -39.21 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.28 -8.76 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602526652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.301 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds