Wall clock time and date at job start Sun Mar 29 2020 21:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00527 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99757 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47609 * 90.00195 * 9 7 5 11 11 H 1.48504 * 109.47343 * 209.99929 * 9 7 5 12 12 H 1.48496 * 109.47151 * 329.99863 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.53783 * 113.61182 * 274.13299 * 16 15 14 18 18 C 1.53957 * 87.01875 * 220.05000 * 17 16 15 19 19 C 1.53778 * 87.11265 * 25.36563 * 18 17 16 20 20 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 21 21 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 23 23 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 24 24 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 25 25 H 0.96996 * 120.00551 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 27 27 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 28 28 H 1.00899 * 110.99995 * 56.04730 * 14 13 2 29 29 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 30 30 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 31 31 H 1.08990 * 112.85361 * 45.33248 * 16 15 14 32 32 H 1.09003 * 113.61584 * 334.56887 * 17 16 15 33 33 H 1.09000 * 113.61286 * 105.47141 * 17 16 15 34 34 H 1.08994 * 113.53603 * 270.80817 * 18 17 16 35 35 H 1.09006 * 113.66601 * 139.93087 * 18 17 16 36 36 H 1.09000 * 113.61215 * 220.09246 * 19 18 17 37 37 H 1.08993 * 113.69471 * 89.19308 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 1.6449 0.2774 -4.7994 9 14 2.9647 -1.9875 -3.9028 10 1 2.0264 -3.1326 -4.0197 11 1 3.8133 -1.9169 -5.1195 12 1 3.8268 -2.1739 -2.7082 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 6 2.6876 1.3152 5.2496 18 6 2.4466 0.9442 6.7242 19 6 2.0785 -0.4643 6.2288 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.1264 -0.7994 -1.2056 24 1 1.6054 -1.7197 -1.2952 25 1 1.8921 -0.0455 -5.6800 26 1 3.1263 -0.7995 1.2055 27 1 1.6055 -1.7199 1.2951 28 1 0.6529 0.1792 2.4753 29 1 3.2128 -0.7039 3.6400 30 1 1.6921 -1.6247 3.7299 31 1 0.6643 0.5190 4.8399 32 1 3.7071 1.1271 4.9130 33 1 2.3302 2.3103 4.9847 34 1 1.6123 1.4798 7.1770 35 1 3.3491 0.9701 7.3350 36 1 1.2300 -0.9036 6.7533 37 1 2.9301 -1.1409 6.1600 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602526654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:19 Heat of formation + Delta-G solvation = -25.222323 kcal Electronic energy + Delta-G solvation = -13871.713878 eV Core-core repulsion = 11647.733142 eV Total energy + Delta-G solvation = -2223.980737 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.87246 -38.14995 -35.38546 -33.84885 -29.89113 -28.47706 -26.50756 -26.24068 -23.91744 -22.87410 -20.75448 -20.14764 -18.93185 -16.95676 -16.62166 -16.33292 -15.68655 -15.57019 -15.00002 -14.63760 -14.48826 -13.82079 -13.57055 -13.42867 -13.25583 -12.87917 -12.63522 -12.56966 -12.27673 -12.09114 -11.74579 -11.53257 -11.47903 -11.29567 -11.09876 -11.04879 -10.81426 -10.73628 -9.27273 -8.26083 -6.28557 1.35509 1.37687 1.49553 2.37809 3.09030 3.22424 3.79841 3.86777 3.96246 4.08934 4.19561 4.22764 4.40242 4.56758 4.58554 4.70850 4.79269 4.85686 4.92228 4.93924 4.99687 5.04238 5.06380 5.13243 5.20712 5.28934 5.37275 5.44813 5.54792 5.67339 5.69768 5.72995 6.15749 6.35046 6.54390 6.78963 7.35025 8.90768 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063420 B = 0.005049 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.397869 B = 5544.763646 C = 5710.551944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.074 3.926 14 N -0.694 5.694 15 C 0.069 3.931 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.139 4.139 19 C -0.132 4.132 20 H 0.034 0.966 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.265 0.735 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.343 0.657 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.084 -3.604 22.189 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.172 1.172 13 C -0.055 4.055 14 N -0.326 5.326 15 C -0.060 4.060 16 C -0.127 4.127 17 C -0.170 4.170 18 C -0.176 4.176 19 C -0.169 4.169 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.636 -3.180 21.986 22.275 hybrid contribution -0.321 -1.026 -0.907 1.406 sum 1.315 -4.205 21.078 21.534 Atomic orbital electron populations 1.21659 0.95279 1.00979 1.00695 1.20898 0.96054 0.98979 0.93171 0.93027 1.19561 0.95934 0.95654 0.93281 1.21459 1.34358 1.08700 0.91268 0.94756 1.26004 0.96987 1.01005 0.95493 1.70070 1.49092 1.41654 0.98711 0.85680 0.79360 0.79499 0.78229 1.19206 1.21115 1.17179 1.21884 0.99902 0.94399 0.89285 1.60472 1.20033 1.50615 1.01482 1.22003 1.00055 0.95102 0.88843 1.22548 0.99790 0.97077 0.93306 1.22909 0.99242 0.98431 0.96434 1.22852 1.01984 0.96720 0.96064 1.22908 1.01744 0.96853 0.95443 0.94663 0.93213 0.91616 0.96655 0.96497 0.92654 0.91905 0.95121 0.83795 0.91561 0.95176 0.89319 0.90779 0.92242 0.89740 0.90945 0.90841 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.78 71.99 0.63 -4.09 16 2 C -0.07 -2.85 2.55 -10.79 -0.03 -2.88 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 5 C -0.52 -30.40 8.96 25.60 0.23 -30.17 16 6 H 0.03 2.21 7.30 -2.91 -0.02 2.19 16 7 C 0.00 0.07 5.47 84.66 0.46 0.53 16 8 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 9 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 13 C 0.07 2.37 5.14 86.30 0.44 2.81 16 14 N -0.69 -18.81 6.50 -513.88 -3.34 -22.15 16 15 C 0.07 1.53 5.51 86.30 0.48 2.00 16 16 C -0.11 -2.01 3.89 -10.26 -0.04 -2.05 16 17 C -0.13 -2.47 7.65 31.18 0.24 -2.23 16 18 C -0.14 -2.03 8.09 31.18 0.25 -1.78 16 19 C -0.13 -1.96 7.65 31.12 0.24 -1.72 16 20 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.07 1.97 6.68 -2.39 -0.02 1.95 16 23 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 24 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.34 8.68 6.98 -89.69 -0.63 8.05 16 29 H 0.07 1.52 7.88 -2.39 -0.02 1.50 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -64.69 292.17 2.18 -62.51 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.33 Total: 13.07 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.01 Total: -39.77 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -3.04 Total: -82.77 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -64.69 2.18 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602526654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.283 kcal (2) G-P(sol) polarization free energy of solvation -64.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds