Wall clock time and date at job start Sun Mar 29 2020 21:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46376 * 2 1 4 4 C 1.52994 * 109.47208 * 119.99370 * 2 1 3 5 5 C 1.50694 * 109.47812 * 295.00519 * 4 2 1 6 6 H 1.08010 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00767 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99213 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00444 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47114 * 59.99638 * 9 7 5 11 11 H 1.48499 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47080 * 299.99969 * 9 7 5 13 13 C 1.52998 * 109.47185 * 240.00175 * 2 1 3 14 14 N 1.46897 * 109.47043 * 64.99488 * 13 2 1 15 15 C 1.46904 * 110.99679 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47223 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47289 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.51964 * 116.28130 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 16 20 20 H 1.09010 * 109.46474 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47306 * 299.99748 * 1 2 3 22 22 H 1.08999 * 109.47250 * 60.00414 * 1 2 3 23 23 H 1.09005 * 109.46846 * 55.00828 * 4 2 1 24 24 H 1.09003 * 109.47062 * 175.00197 * 4 2 1 25 25 H 0.97004 * 119.99412 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.46636 * 304.99308 * 13 2 1 27 27 H 1.08997 * 109.46749 * 184.99835 * 13 2 1 28 28 H 1.00896 * 111.00578 * 56.05060 * 14 13 2 29 29 H 1.08999 * 109.47343 * 59.99625 * 15 14 13 30 30 H 1.09005 * 109.46870 * 299.99866 * 15 14 13 31 31 H 1.08999 * 109.47504 * 59.99434 * 16 15 14 32 32 H 1.09005 * 109.46851 * 299.99588 * 16 15 14 33 33 H 1.09002 * 115.54973 * 330.57913 * 17 16 15 34 34 H 1.09001 * 117.49733 * 214.97413 * 18 17 16 35 35 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 36 36 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 37 37 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0571 2.4766 6 1 1.0806 0.9747 2.3757 7 6 1.9933 -0.4015 3.7283 8 7 2.6765 -1.5185 3.8511 9 14 1.4997 0.5636 5.2496 10 1 0.0197 0.6702 5.3095 11 1 1.9946 -0.1364 6.4621 12 1 2.0917 1.9240 5.1864 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1247 -0.6271 -3.6672 16 6 1.7024 0.1908 -4.8892 17 6 2.1960 -0.5010 -6.1615 18 6 1.1398 -1.0126 -7.1432 19 6 1.9730 0.2226 -7.4910 20 1 -0.3632 -1.0278 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6055 -1.7197 1.2952 24 1 3.1264 -0.7993 1.2056 25 1 2.9238 -1.8414 4.7318 26 1 1.6055 -1.7198 -1.2950 27 1 3.1263 -0.7994 -1.2055 28 1 1.9880 0.9873 -2.3967 29 1 1.6905 -1.6249 -3.7296 30 1 3.2117 -0.7050 -3.6405 31 1 2.1370 1.1885 -4.8266 32 1 0.6155 0.2690 -4.9160 33 1 3.1090 -1.0866 -6.0541 34 1 1.3580 -1.9349 -7.6816 35 1 0.0931 -0.8568 -6.8825 36 1 1.4743 1.1913 -7.4593 37 1 2.7394 0.1129 -8.2584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602562175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:24 Heat of formation + Delta-G solvation = -25.128178 kcal Electronic energy + Delta-G solvation = -13579.006894 eV Core-core repulsion = 11355.030239 eV Total energy + Delta-G solvation = -2223.976654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95416 -37.97768 -35.70776 -34.01754 -30.76822 -28.69391 -26.64124 -24.60013 -23.31931 -22.99025 -21.39723 -20.65723 -18.48033 -17.00078 -16.60639 -16.28799 -15.75475 -15.48722 -15.18729 -14.64099 -14.28875 -14.08407 -13.35657 -13.21610 -12.78388 -12.70535 -12.61149 -12.45795 -12.28434 -12.20723 -12.11663 -11.93277 -11.48545 -11.19185 -11.08490 -10.85000 -10.69914 -10.52783 -9.32606 -8.17211 -6.26671 1.40615 1.43688 1.51349 2.42586 2.92331 3.16043 3.22444 3.93635 4.03522 4.05631 4.15547 4.26834 4.36442 4.42751 4.53749 4.65063 4.81520 4.82016 4.88504 4.93265 5.02378 5.06960 5.09536 5.18948 5.28892 5.30080 5.45258 5.46484 5.50742 5.56266 5.81112 5.88732 6.08227 6.31508 6.52340 6.89224 7.41636 8.94839 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.089782 B = 0.004238 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.790386 B = 6604.806527 C = 6720.595305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.077 4.077 17 C -0.162 4.162 18 C -0.183 4.183 19 C -0.177 4.177 20 H 0.033 0.967 21 H 0.038 0.962 22 H 0.067 0.933 23 H -0.011 1.011 24 H -0.015 1.015 25 H 0.262 0.738 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.343 0.657 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 3.511 -19.062 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.053 4.053 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.115 4.115 17 C -0.181 4.181 18 C -0.220 4.220 19 C -0.214 4.214 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.086 0.914 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.161 0.839 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.436 3.113 -18.977 19.384 hybrid contribution 1.028 0.157 1.166 1.562 sum -1.408 3.270 -17.811 18.163 Atomic orbital electron populations 1.21486 0.94657 1.00338 1.00542 1.21028 0.96770 0.98465 0.93139 0.92681 1.19017 0.94064 0.94700 0.92798 1.21627 1.34526 1.08649 0.92084 0.92003 1.25979 0.95227 0.96124 1.02727 1.70104 1.40275 1.22990 1.24362 0.85536 0.78955 0.78760 0.78027 1.19195 1.21021 1.19164 1.21845 0.96474 0.97349 0.89596 1.60458 1.64204 1.05963 1.01255 1.21950 0.97048 0.98419 0.89248 1.21040 1.01115 0.98216 0.91104 1.22275 1.00864 1.04174 0.90752 1.23106 0.96931 0.98590 1.03335 1.23036 1.03402 0.96865 0.98053 0.94731 0.94291 0.91419 0.99247 0.99620 0.92924 0.92210 0.96492 0.83883 0.91691 0.95541 0.91382 0.91392 0.87922 0.88301 0.88780 0.88479 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.89 71.98 0.64 -3.77 16 2 C -0.08 -3.14 2.48 -10.79 -0.03 -3.16 16 3 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 4 C 0.03 1.71 4.45 29.84 0.13 1.84 16 5 C -0.53 -30.45 8.41 25.60 0.22 -30.24 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C 0.08 2.71 5.07 86.30 0.44 3.15 16 14 N -0.69 -19.58 5.96 -513.88 -3.06 -22.64 16 15 C 0.06 1.49 5.64 86.30 0.49 1.98 16 16 C -0.08 -1.50 5.76 30.59 0.18 -1.32 16 17 C -0.16 -2.78 5.73 -10.79 -0.06 -2.84 16 18 C -0.18 -2.83 10.18 30.59 0.31 -2.52 16 19 C -0.18 -2.56 10.25 30.60 0.31 -2.25 16 20 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 21 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 22 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 23 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 26 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.34 9.06 8.73 -89.70 -0.78 8.27 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 30 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.39 7.88 -2.38 -0.02 1.37 16 33 H 0.10 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -62.87 302.91 2.56 -60.31 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.22 Total: 12.03 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.09 Total: -38.86 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.78 Total: -80.36 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.87 2.56 -60.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.180 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds