Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.53004 * 109.47102 * 240.00042 * 2 1 3 5 5 C 1.50699 * 109.46847 * 65.00007 * 4 2 1 6 6 H 1.08002 * 120.00511 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99783 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99573 * 180.27665 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.53002 * 109.47119 * 120.00133 * 2 1 3 14 14 N 1.46904 * 109.46972 * 295.00211 * 13 2 1 15 15 C 1.46896 * 110.99678 * 180.02562 * 14 13 2 16 16 C 1.53005 * 109.47005 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47335 * 179.97438 * 16 15 14 18 18 C 1.52998 * 117.50040 * 243.74790 * 17 16 15 19 19 C 1.52996 * 117.50106 * 175.08701 * 17 16 15 20 20 H 1.09006 * 109.46667 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47435 * 299.99531 * 1 2 3 22 22 H 1.08997 * 109.47191 * 60.00378 * 1 2 3 23 23 H 1.08992 * 109.47264 * 305.00181 * 4 2 1 24 24 H 1.09005 * 109.46510 * 184.99768 * 4 2 1 25 25 H 0.97004 * 119.99485 * 179.72881 * 8 7 5 26 26 H 1.08997 * 109.46854 * 55.00154 * 13 2 1 27 27 H 1.09005 * 109.47142 * 175.00317 * 13 2 1 28 28 H 1.00899 * 110.99785 * 56.04801 * 14 13 2 29 29 H 1.09005 * 109.47341 * 299.99518 * 15 14 13 30 30 H 1.08999 * 109.47600 * 60.00179 * 15 14 13 31 31 H 1.08995 * 109.47296 * 299.99988 * 16 15 14 32 32 H 1.08999 * 109.46715 * 59.99735 * 16 15 14 33 33 H 1.08999 * 115.54871 * 29.41691 * 17 16 15 34 34 H 1.09001 * 117.50076 * 0.02562 * 18 17 16 35 35 H 1.09002 * 117.49990 * 145.01710 * 18 17 16 36 36 H 1.08997 * 117.50139 * 214.97877 * 19 17 16 37 37 H 1.09001 * 117.49458 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4017 -3.7283 8 7 1.6500 0.2805 -4.7990 9 14 2.9648 -1.9875 -3.9027 10 1 2.0264 -3.1326 -4.0195 11 1 3.8134 -1.9169 -5.1193 12 1 3.8269 -2.1739 -2.7081 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0374 2.4457 15 6 2.1257 -0.6266 3.6671 16 6 1.7033 0.1914 4.8892 17 6 2.1969 -0.5004 6.1615 18 6 1.1403 -1.0124 7.1425 19 6 1.9740 0.2232 7.4910 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6054 -1.7197 -1.2952 24 1 3.1264 -0.7994 -1.2055 25 1 1.9010 -0.0402 -5.6795 26 1 1.6054 -1.7198 1.2951 27 1 3.1264 -0.7995 1.2056 28 1 0.6528 0.1792 2.4753 29 1 1.6920 -1.6247 3.7300 30 1 3.2126 -0.7037 3.6401 31 1 2.1373 1.1893 4.8261 32 1 0.6164 0.2690 4.9164 33 1 3.1098 -1.0861 6.0541 34 1 0.0936 -0.8568 6.8813 35 1 1.3583 -1.9348 7.6808 36 1 2.7401 0.1132 8.2585 37 1 1.4753 1.1919 7.4592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602562176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = -4.227992 kcal Electronic energy + Delta-G solvation = -13627.419079 eV Core-core repulsion = 11404.348725 eV Total energy + Delta-G solvation = -2223.070354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.11021 -36.82605 -34.15694 -32.11111 -29.69689 -27.32979 -25.31646 -22.84265 -22.54358 -21.64015 -20.57697 -18.95042 -16.81775 -15.83735 -15.80878 -15.02473 -14.34882 -13.88742 -13.81687 -13.55686 -12.74442 -12.67943 -12.14878 -11.86370 -11.76452 -11.55334 -11.46813 -11.28477 -10.99737 -10.70509 -10.48854 -10.34734 -10.05670 -9.77718 -9.70411 -9.39099 -9.02964 -8.49399 -8.17409 -5.99710 -3.96437 3.33122 3.40597 3.44665 3.57728 4.22470 4.49102 4.68021 4.71126 4.77602 5.10105 5.27711 5.33909 5.39896 5.43915 5.57254 5.66913 5.70749 5.74763 5.87092 5.88068 5.98421 6.08895 6.16469 6.21320 6.40920 6.49064 6.79903 6.99423 7.08900 7.28354 7.35515 7.51680 7.64703 7.85480 8.60097 9.06149 9.63316 11.13789 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.069545 B = 0.004581 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.518691 B = 6111.168827 C = 6326.634416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.692 5.692 15 C 0.060 3.940 16 C -0.087 4.087 17 C -0.149 4.149 18 C -0.184 4.184 19 C -0.182 4.182 20 H 0.040 0.960 21 H 0.034 0.966 22 H 0.068 0.932 23 H 0.009 0.991 24 H 0.015 0.985 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.338 0.662 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -2.872 20.748 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.323 5.323 15 C -0.069 4.069 16 C -0.125 4.125 17 C -0.168 4.168 18 C -0.221 4.221 19 C -0.219 4.219 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.087 0.913 23 H 0.027 0.973 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.478 -2.450 20.513 20.664 hybrid contribution -0.092 -1.675 -0.188 1.688 sum 0.386 -4.126 20.325 20.743 Atomic orbital electron populations 1.21752 0.96264 1.00479 1.00815 1.21039 0.95214 1.00216 0.93044 0.91017 1.19605 0.95939 0.95678 0.93441 1.21146 1.35280 1.09525 0.89097 0.90814 1.25035 0.95669 0.96972 0.95958 1.69919 1.47296 1.39267 0.98024 0.86798 0.80662 0.84296 0.77626 1.20443 1.21475 1.19078 1.22158 1.00253 0.94432 0.89828 1.60541 1.19645 1.50617 1.01531 1.21919 1.00489 0.95047 0.89448 1.21156 1.00435 0.99397 0.91493 1.22307 1.00413 1.03273 0.90806 1.23050 0.97008 0.98073 1.03936 1.22965 1.03359 0.96775 0.98794 0.94114 0.94698 0.91333 0.97263 0.96680 0.92847 0.95916 0.91558 0.84315 0.95656 0.91252 0.90653 0.92087 0.87852 0.88864 0.89095 0.88995 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.53 2.55 -90.62 -0.23 -1.76 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.64 8.96 -34.44 -0.31 -14.95 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 N -0.69 -10.08 6.50 -113.77 -0.74 -10.82 16 15 C 0.06 0.74 5.64 -3.82 -0.02 0.71 16 16 C -0.09 -0.90 5.76 -26.73 -0.15 -1.05 16 17 C -0.15 -1.36 5.73 -90.62 -0.52 -1.88 16 18 C -0.18 -1.51 10.18 -26.70 -0.27 -1.79 16 19 C -0.18 -1.47 10.25 -26.70 -0.27 -1.75 16 20 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 22 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 23 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 24 H 0.01 0.37 7.20 -51.93 -0.37 -0.01 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.34 4.66 6.98 -39.29 -0.27 4.39 16 29 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 33 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -29.97 297.05 -8.60 -38.57 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.77 Total: 0.00 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.67 Total: -22.15 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.03 Total: -38.26 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.97 -8.60 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602562176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.341 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds