Wall clock time and date at job start Sun Mar 29 2020 21:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99845 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00340 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.46951 * 89.99736 * 9 7 5 11 11 H 1.48490 * 109.47244 * 210.00587 * 9 7 5 12 12 H 1.48505 * 109.46577 * 330.00042 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53002 * 115.55130 * 34.33536 * 16 15 14 18 18 C 1.53006 * 117.49936 * 248.61944 * 16 15 14 19 19 C 1.53000 * 60.00083 * 252.51494 * 18 16 15 20 20 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 21 21 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 22 22 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 24 24 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 25 25 H 0.96994 * 120.00238 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 27 27 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 28 28 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 29 29 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 30 30 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 31 31 H 1.09000 * 109.47245 * 85.57870 * 17 16 15 32 32 H 1.09000 * 109.46674 * 205.57878 * 17 16 15 33 33 H 1.09000 * 109.47200 * 325.57529 * 17 16 15 34 34 H 1.08996 * 117.49984 * 0.02562 * 18 16 15 35 35 H 1.09004 * 117.49682 * 145.02599 * 18 16 15 36 36 H 1.08997 * 117.49978 * 252.51236 * 19 18 16 37 37 H 1.09001 * 117.49786 * 107.48741 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9636 -1.9884 3.9028 10 1 4.4169 -1.6850 3.8779 11 1 2.6162 -2.6420 5.1901 12 1 2.6287 -2.8994 2.7789 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 1.6828 1.7083 -4.6936 18 6 0.6454 -0.4164 -5.8138 19 6 2.1046 -0.3386 -6.2672 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6053 -1.7198 1.2952 24 1 3.1262 -0.7995 1.2056 25 1 1.8928 -0.0453 5.6799 26 1 1.6054 -1.7198 -1.2952 27 1 3.1263 -0.7995 -1.2056 28 1 1.9882 0.9873 -2.3967 29 1 3.2128 -0.7038 -3.6400 30 1 1.6921 -1.6246 -3.7300 31 1 2.6791 2.1110 -4.8761 32 1 0.9764 2.1556 -5.3928 33 1 1.3790 1.9391 -3.6726 34 1 0.2513 -1.3982 -5.5512 35 1 -0.0644 0.2650 -6.2828 36 1 2.3548 0.3940 -7.0345 37 1 2.6707 -1.2693 -6.3031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602565575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:12 Heat of formation + Delta-G solvation = 3.972516 kcal Electronic energy + Delta-G solvation = -13973.861131 eV Core-core repulsion = 11751.146377 eV Total energy + Delta-G solvation = -2222.714753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.65389 -36.44679 -33.60074 -31.85972 -28.67334 -27.59599 -26.31414 -24.10139 -22.52718 -21.83879 -19.47090 -18.66345 -16.76672 -15.83586 -15.29185 -14.93805 -14.14433 -13.93512 -13.53028 -13.47345 -12.77681 -12.58079 -12.25971 -12.12275 -11.72713 -11.61780 -11.50336 -11.07878 -10.92952 -10.69783 -10.44103 -10.22897 -9.91192 -9.75893 -9.62744 -9.35859 -9.02706 -8.49191 -8.12439 -5.99673 -3.96395 3.32838 3.40383 3.44423 3.63433 4.34234 4.49013 4.66340 4.77325 4.92144 5.05015 5.34006 5.45240 5.50601 5.55904 5.65921 5.76613 5.78175 5.81255 5.89026 6.00945 6.03934 6.06571 6.26662 6.34727 6.45676 6.63031 6.88854 7.07704 7.17836 7.29724 7.33948 7.50958 7.63581 7.85629 8.60223 9.06247 9.63384 11.13844 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060479 B = 0.005401 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.862894 B = 5182.821544 C = 5389.667718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.684 5.684 15 C 0.095 3.905 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.169 4.169 19 C -0.182 4.182 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.038 0.962 23 H 0.016 0.984 24 H 0.008 0.992 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.339 0.661 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 -1.198 -19.398 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.317 5.317 15 C -0.034 4.034 16 C -0.120 4.120 17 C -0.177 4.177 18 C -0.206 4.206 19 C -0.219 4.219 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.159 0.841 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.349 -1.484 -19.226 19.286 hybrid contribution 1.522 -0.728 0.269 1.708 sum 1.871 -2.212 -18.956 19.176 Atomic orbital electron populations 1.21593 0.95235 1.00632 1.00676 1.21006 0.96401 0.98968 0.92888 0.92275 1.19619 0.95346 0.96261 0.93523 1.21143 1.35233 1.09518 0.89104 0.90817 1.25027 0.95730 0.96878 0.95956 1.69915 1.47259 1.39345 0.97996 0.86805 0.80574 0.84586 0.77463 1.20455 1.21473 1.19090 1.22184 0.97021 0.97831 0.89811 1.60595 1.64084 1.05833 1.01180 1.21420 0.96722 0.96956 0.88347 1.21461 1.03867 0.95818 0.90808 1.21359 1.01260 0.91985 1.03096 1.23095 0.91724 1.02421 1.03329 1.23041 0.98478 1.02878 0.97534 0.92270 0.93656 0.94254 0.96613 0.97415 0.92853 0.91622 0.95896 0.84084 0.95344 0.91168 0.92700 0.92606 0.90578 0.88914 0.89048 0.88987 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 6 H 0.07 2.26 7.30 -52.48 -0.38 1.87 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.00 5.08 -3.82 -0.02 0.98 16 14 N -0.68 -9.78 5.57 -113.78 -0.63 -10.41 16 15 C 0.10 1.17 5.87 -3.82 -0.02 1.15 16 16 C -0.12 -1.28 2.57 -154.50 -0.40 -1.68 16 17 C -0.12 -1.21 9.53 37.16 0.35 -0.85 16 18 C -0.17 -1.67 9.82 -26.73 -0.26 -1.93 16 19 C -0.18 -1.68 9.97 -26.73 -0.27 -1.94 16 20 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 21 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.34 4.62 6.55 -39.29 -0.26 4.36 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 33 H 0.08 0.83 5.84 -51.93 -0.30 0.53 16 34 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -29.93 294.39 -7.78 -37.72 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.68 Total: -0.17 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -1.01 Total: -21.51 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.14 Total: -37.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.93 -7.78 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602565575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.691 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds