Wall clock time and date at job start Sun Mar 29 2020 21:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.47136 * 120.00210 * 2 1 3 5 5 C 1.50704 * 109.46906 * 294.99861 * 4 2 1 6 6 H 1.08004 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99820 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99845 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00340 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.46951 * 89.99736 * 9 7 5 11 11 H 1.48490 * 109.47244 * 210.00587 * 9 7 5 12 12 H 1.48505 * 109.46577 * 330.00042 * 9 7 5 13 13 C 1.53007 * 109.47194 * 239.99816 * 2 1 3 14 14 N 1.46898 * 109.46764 * 65.00211 * 13 2 1 15 15 C 1.46906 * 110.99888 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53002 * 115.55130 * 34.33536 * 16 15 14 18 18 C 1.53006 * 117.49936 * 248.61944 * 16 15 14 19 19 C 1.53000 * 60.00083 * 252.51494 * 18 16 15 20 20 H 1.09000 * 109.46901 * 300.00429 * 1 2 3 21 21 H 1.09001 * 109.46792 * 60.00109 * 1 2 3 22 22 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47153 * 54.99452 * 4 2 1 24 24 H 1.08992 * 109.47216 * 174.99961 * 4 2 1 25 25 H 0.96994 * 120.00238 * 180.02562 * 8 7 5 26 26 H 1.08995 * 109.47210 * 305.00164 * 13 2 1 27 27 H 1.08997 * 109.46954 * 185.00148 * 13 2 1 28 28 H 1.00902 * 111.00533 * 56.04323 * 14 13 2 29 29 H 1.09000 * 109.47033 * 300.00113 * 15 14 13 30 30 H 1.09001 * 109.46544 * 60.00058 * 15 14 13 31 31 H 1.09000 * 109.47245 * 85.57870 * 17 16 15 32 32 H 1.09000 * 109.46674 * 205.57878 * 17 16 15 33 33 H 1.09000 * 109.47200 * 325.57529 * 17 16 15 34 34 H 1.08996 * 117.49984 * 0.02562 * 18 16 15 35 35 H 1.09004 * 117.49682 * 145.02599 * 18 16 15 36 36 H 1.08997 * 117.49978 * 252.51236 * 19 18 16 37 37 H 1.09001 * 117.49786 * 107.48741 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4017 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9636 -1.9884 3.9028 10 1 4.4169 -1.6850 3.8779 11 1 2.6162 -2.6420 5.1901 12 1 2.6287 -2.8994 2.7789 13 6 2.0400 -0.7213 -1.2493 14 7 1.6514 0.0374 -2.4456 15 6 2.1258 -0.6266 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 1.6828 1.7083 -4.6936 18 6 0.6454 -0.4164 -5.8138 19 6 2.1046 -0.3386 -6.2672 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6053 -1.7198 1.2952 24 1 3.1262 -0.7995 1.2056 25 1 1.8928 -0.0453 5.6799 26 1 1.6054 -1.7198 -1.2952 27 1 3.1263 -0.7995 -1.2056 28 1 1.9882 0.9873 -2.3967 29 1 3.2128 -0.7038 -3.6400 30 1 1.6921 -1.6246 -3.7300 31 1 2.6791 2.1110 -4.8761 32 1 0.9764 2.1556 -5.3928 33 1 1.3790 1.9391 -3.6726 34 1 0.2513 -1.3982 -5.5512 35 1 -0.0644 0.2650 -6.2828 36 1 2.3548 0.3940 -7.0345 37 1 2.6707 -1.2693 -6.3031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602565575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:12 Heat of formation + Delta-G solvation = -13.940724 kcal Electronic energy + Delta-G solvation = -13974.637907 eV Core-core repulsion = 11751.146377 eV Total energy + Delta-G solvation = -2223.491530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55129 -37.85779 -35.24167 -33.76175 -29.81362 -29.16688 -27.59084 -25.59889 -23.57700 -23.20278 -20.94894 -19.70004 -18.91032 -16.88332 -16.50233 -16.30652 -15.77714 -15.30933 -15.03258 -14.45826 -14.41227 -13.86756 -13.57783 -13.35879 -13.28341 -12.83535 -12.79695 -12.46245 -12.25455 -12.10087 -11.96593 -11.79406 -11.46625 -11.30433 -11.12110 -10.87460 -10.73023 -10.53554 -9.25865 -8.25704 -6.28060 1.35685 1.37850 1.49626 2.38043 2.84710 3.09489 3.30958 3.85611 3.94858 4.10736 4.16774 4.20736 4.31235 4.48487 4.66917 4.67587 4.82327 4.86614 4.90660 4.95730 4.99490 5.06352 5.08428 5.10960 5.21535 5.31206 5.38923 5.41362 5.47543 5.55775 5.71107 5.73134 6.13109 6.35478 6.50405 6.79543 7.35512 8.91147 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060479 B = 0.005401 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.862894 B = 5182.821544 C = 5389.667718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.035 0.965 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.248 1.248 13 C 0.073 3.927 14 N -0.686 5.686 15 C 0.097 3.903 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.172 4.172 19 C -0.169 4.169 20 H 0.027 0.973 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.264 0.736 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.343 0.657 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -2.549 -21.436 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.056 4.056 14 N -0.319 5.319 15 C -0.032 4.032 16 C -0.134 4.134 17 C -0.176 4.176 18 C -0.209 4.209 19 C -0.206 4.206 20 H 0.046 0.954 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.164 0.836 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.255 -2.831 -21.293 21.517 hybrid contribution 1.180 -0.215 0.880 1.488 sum 2.435 -3.046 -20.414 20.783 Atomic orbital electron populations 1.21490 0.95048 1.00624 1.00073 1.20890 0.96503 0.98461 0.93052 0.93147 1.19573 0.95697 0.95919 0.93318 1.21458 1.34334 1.08668 0.91255 0.94707 1.25996 0.97059 1.00896 0.95506 1.70071 1.49108 1.41641 0.98716 0.85687 0.79174 0.79951 0.78000 1.19279 1.21140 1.17148 1.21910 0.97026 0.97524 0.89132 1.60543 1.64327 1.06004 1.01064 1.21432 0.96832 0.97001 0.87968 1.21453 1.05193 0.95907 0.90849 1.21340 1.01867 0.91771 1.02572 1.23157 0.92257 1.02390 1.03086 1.23105 0.97858 1.03185 0.96485 0.95396 0.91630 0.93898 0.96416 0.96738 0.92672 0.91374 0.95514 0.83633 0.95091 0.91298 0.92052 0.91845 0.91731 0.89123 0.88413 0.87829 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.89 71.98 0.64 -3.81 16 2 C -0.07 -2.75 2.48 -10.79 -0.03 -2.78 16 3 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.01 -0.34 3.52 29.85 0.10 -0.23 16 5 C -0.52 -30.21 8.96 25.60 0.23 -29.98 16 6 H 0.03 2.23 7.30 -2.91 -0.02 2.21 16 7 C 0.00 0.09 5.47 84.65 0.46 0.55 16 8 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 9 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 13 C 0.07 2.29 5.08 86.31 0.44 2.73 16 14 N -0.69 -18.28 5.57 -513.88 -2.86 -21.14 16 15 C 0.10 2.17 5.87 86.30 0.51 2.68 16 16 C -0.13 -2.56 2.57 -52.18 -0.13 -2.69 16 17 C -0.12 -2.15 9.53 71.98 0.69 -1.46 16 18 C -0.17 -3.00 9.82 30.60 0.30 -2.70 16 19 C -0.17 -2.64 9.97 30.60 0.31 -2.34 16 20 H 0.03 1.22 6.95 -2.39 -0.02 1.20 16 21 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 24 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 25 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.34 8.78 6.55 -89.69 -0.59 8.20 16 29 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.56 7.90 -2.39 -0.02 1.54 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.04 7.90 -2.39 -0.02 1.02 16 33 H 0.06 1.31 5.84 -2.39 -0.01 1.30 16 34 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.10 1.56 8.05 -2.39 -0.02 1.55 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.19 294.39 3.20 -60.99 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.37 Total: 13.82 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.51 Total: -40.03 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.56 Total: -81.62 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -64.19 3.20 -60.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602565575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.049 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds