Wall clock time and date at job start Sun Mar 29 2020 21:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48492 * 109.47121 * 330.00156 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53002 * 112.84800 * 50.33582 * 15 14 13 17 17 C 1.53781 * 113.61381 * 279.13638 * 15 14 13 18 18 C 1.53950 * 87.02030 * 220.04711 * 17 15 14 19 19 C 1.53777 * 113.61417 * 181.53229 * 15 14 13 20 20 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 21 21 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 23 23 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 24 24 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 25 25 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 27 27 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 28 28 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 29 29 H 1.08997 * 109.46912 * 69.66412 * 16 15 14 30 30 H 1.08995 * 109.46730 * 189.66489 * 16 15 14 31 31 H 1.09003 * 109.46831 * 309.66239 * 16 15 14 32 32 H 1.08997 * 113.61451 * 334.57203 * 17 15 14 33 33 H 1.09004 * 113.61161 * 105.46887 * 17 15 14 34 34 H 1.09002 * 113.54028 * 270.81866 * 18 17 15 35 35 H 1.09000 * 113.74558 * 139.94604 * 18 17 15 36 36 H 1.09002 * 113.61697 * 254.53258 * 19 15 14 37 37 H 1.09001 * 113.61442 * 25.42850 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2267 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 3.6114 -0.9875 3.6085 17 6 1.2272 -1.7871 4.1260 18 6 1.4574 -1.2904 5.5649 19 6 1.7188 0.0993 4.9604 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1263 -0.7996 -1.2056 24 1 1.6053 -1.7199 -1.2951 25 1 2.9220 -1.8430 -4.7318 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7995 1.2057 28 1 0.6529 0.1794 2.4752 29 1 4.2084 -0.0764 3.6457 30 1 3.8646 -1.6228 4.4572 31 1 3.8193 -1.5206 2.6807 32 1 0.1933 -1.6968 3.7930 33 1 1.6517 -2.7717 3.9299 34 1 2.3328 -1.7303 6.0426 35 1 0.5667 -1.3333 6.1918 36 1 2.5394 0.6355 5.4370 37 1 0.8195 0.7063 4.8560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602593820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:07 Heat of formation + Delta-G solvation = -5.149157 kcal Electronic energy + Delta-G solvation = -14296.156726 eV Core-core repulsion = 12073.046427 eV Total energy + Delta-G solvation = -2223.110299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64519 -36.01760 -32.98298 -31.35329 -28.60083 -26.75941 -25.86573 -25.41302 -23.13871 -21.64666 -18.94030 -18.39384 -16.39204 -16.06913 -15.31705 -14.58369 -14.24994 -13.82156 -13.48234 -12.94889 -12.65886 -12.31174 -12.19858 -11.98478 -11.82224 -11.44648 -11.16071 -10.95652 -10.85721 -10.70675 -10.49004 -10.32300 -10.14276 -10.07519 -9.65886 -9.08757 -8.91699 -8.30139 -7.96305 -5.94943 -3.95906 3.35027 3.41131 3.44460 4.36725 4.51344 4.62936 4.69969 4.83647 4.89556 5.40869 5.49752 5.57208 5.69905 5.76462 5.78572 5.86279 5.87058 5.88190 6.03743 6.09307 6.14225 6.26778 6.34297 6.41418 6.53668 6.63018 7.02423 7.14925 7.22318 7.49196 7.72773 7.76904 7.90497 8.05695 8.49837 9.10529 9.67346 11.16612 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067029 B = 0.005689 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.631850 B = 4920.995315 C = 5074.556552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.095 3.905 16 C -0.129 4.129 17 C -0.173 4.173 18 C -0.140 4.140 19 C -0.128 4.128 20 H 0.062 0.938 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.339 0.661 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 0.485 15.940 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.307 5.307 15 C 0.003 3.997 16 C -0.186 4.186 17 C -0.213 4.213 18 C -0.178 4.178 19 C -0.166 4.166 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.317 0.805 15.751 15.826 hybrid contribution -0.895 -0.368 -0.895 1.318 sum -2.212 0.437 14.856 15.026 Atomic orbital electron populations 1.21738 0.96800 1.00353 1.00181 1.21232 0.94790 1.00064 0.94296 0.91742 1.19108 0.96096 0.95350 0.90404 1.21249 1.34552 1.08225 0.91010 0.92587 1.25021 0.95378 0.95073 0.99078 1.69972 1.39229 1.21196 1.23332 0.86631 0.78926 0.79808 0.82862 1.20723 1.21343 1.19926 1.22143 1.00455 0.94525 0.89384 1.60463 1.19176 1.49916 1.01134 1.22250 0.94985 0.92475 0.90012 1.21629 0.93273 1.01661 1.02065 1.23769 1.00577 0.99941 0.97017 1.22758 1.01425 0.97350 0.96249 1.23068 1.01562 0.96174 0.95836 0.91926 0.94093 0.95040 0.96707 0.96797 0.93133 0.95909 0.91200 0.84186 0.91745 0.92454 0.91569 0.90425 0.91661 0.90355 0.91740 0.91379 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.13 4.52 -3.82 -0.02 1.11 16 14 N -0.68 -10.32 6.43 -99.14 -0.64 -10.96 16 15 C 0.09 1.22 1.22 -130.79 -0.16 1.06 16 16 C -0.13 -1.61 8.78 37.16 0.33 -1.28 16 17 C -0.17 -2.04 7.20 -25.83 -0.19 -2.23 16 18 C -0.14 -1.39 7.74 -25.83 -0.20 -1.59 16 19 C -0.13 -1.41 7.46 -25.92 -0.19 -1.60 16 20 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 27 H 0.07 1.29 6.27 -51.93 -0.33 0.96 16 28 H 0.34 4.94 6.86 -39.29 -0.27 4.67 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 31 H 0.07 0.90 6.11 -51.93 -0.32 0.59 16 32 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.08 0.71 7.64 -51.93 -0.40 0.32 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 289.62 15.07 4.36 4.36 Total: -1.00 -29.46 289.62 -7.94 -37.40 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.54 Total: 0.28 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -0.85 Total: -21.45 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.10 Total: -37.47 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.46 -7.94 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.250 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds