Wall clock time and date at job start Sun Mar 29 2020 21:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48492 * 109.47121 * 330.00156 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53002 * 112.84800 * 50.33582 * 15 14 13 17 17 C 1.53781 * 113.61381 * 279.13638 * 15 14 13 18 18 C 1.53950 * 87.02030 * 220.04711 * 17 15 14 19 19 C 1.53777 * 113.61417 * 181.53229 * 15 14 13 20 20 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 21 21 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 23 23 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 24 24 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 25 25 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 27 27 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 28 28 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 29 29 H 1.08997 * 109.46912 * 69.66412 * 16 15 14 30 30 H 1.08995 * 109.46730 * 189.66489 * 16 15 14 31 31 H 1.09003 * 109.46831 * 309.66239 * 16 15 14 32 32 H 1.08997 * 113.61451 * 334.57203 * 17 15 14 33 33 H 1.09004 * 113.61161 * 105.46887 * 17 15 14 34 34 H 1.09002 * 113.54028 * 270.81866 * 18 17 15 35 35 H 1.09000 * 113.74558 * 139.94604 * 18 17 15 36 36 H 1.09002 * 113.61697 * 254.53258 * 19 15 14 37 37 H 1.09001 * 113.61442 * 25.42850 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2267 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 3.6114 -0.9875 3.6085 17 6 1.2272 -1.7871 4.1260 18 6 1.4574 -1.2904 5.5649 19 6 1.7188 0.0993 4.9604 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1263 -0.7996 -1.2056 24 1 1.6053 -1.7199 -1.2951 25 1 2.9220 -1.8430 -4.7318 26 1 1.6053 -1.7198 1.2952 27 1 3.1263 -0.7995 1.2057 28 1 0.6529 0.1794 2.4752 29 1 4.2084 -0.0764 3.6457 30 1 3.8646 -1.6228 4.4572 31 1 3.8193 -1.5206 2.6807 32 1 0.1933 -1.6968 3.7930 33 1 1.6517 -2.7717 3.9299 34 1 2.3328 -1.7303 6.0426 35 1 0.5667 -1.3333 6.1918 36 1 2.5394 0.6355 5.4370 37 1 0.8195 0.7063 4.8560 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602593820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:07 Heat of formation + Delta-G solvation = -22.882748 kcal Electronic energy + Delta-G solvation = -14296.925712 eV Core-core repulsion = 12073.046427 eV Total energy + Delta-G solvation = -2223.879285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65286 -37.63364 -34.88462 -32.98651 -29.73936 -28.66114 -27.19249 -26.49504 -24.82333 -22.92636 -20.64987 -19.39605 -18.51511 -17.21087 -16.62719 -16.33522 -15.72407 -15.08812 -14.78064 -14.40313 -14.30068 -13.78106 -13.37692 -13.24646 -13.12002 -13.07562 -12.76788 -12.61749 -12.23229 -12.21926 -11.89997 -11.81368 -11.49905 -11.33777 -11.24795 -11.01705 -10.77618 -10.53318 -9.18190 -8.17255 -6.26595 1.40369 1.41616 1.52536 2.42377 3.16106 3.24111 3.71270 3.76865 3.91061 3.98186 4.25015 4.29521 4.45141 4.58953 4.69349 4.76698 4.80786 4.84824 4.89801 4.94211 5.01952 5.07107 5.16696 5.19052 5.25844 5.35929 5.39007 5.47902 5.49686 5.58385 5.80708 5.89419 6.19515 6.33282 6.58865 6.89307 7.41733 8.94920 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067029 B = 0.005689 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.631850 B = 4920.995315 C = 5074.556552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.079 3.921 14 N -0.678 5.678 15 C 0.080 3.920 16 C -0.129 4.129 17 C -0.176 4.176 18 C -0.127 4.127 19 C -0.123 4.123 20 H 0.045 0.955 21 H 0.039 0.961 22 H 0.066 0.934 23 H -0.015 1.015 24 H -0.012 1.012 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.059 0.941 28 H 0.344 0.656 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 1.418 17.136 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.050 4.050 14 N -0.309 5.309 15 C -0.011 4.011 16 C -0.186 4.186 17 C -0.215 4.215 18 C -0.165 4.165 19 C -0.161 4.161 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.004 0.996 24 H 0.007 0.993 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.267 1.746 16.971 17.211 hybrid contribution -0.570 -0.683 -1.231 1.519 sum -2.837 1.063 15.740 16.029 Atomic orbital electron populations 1.21639 0.95032 1.00547 1.01038 1.21037 0.96198 0.98928 0.93381 0.92644 1.18999 0.94128 0.94539 0.92773 1.21642 1.34479 1.08534 0.92071 0.92100 1.25962 0.95250 0.96073 1.02672 1.70109 1.40386 1.22922 1.24282 0.85491 0.79033 0.78357 0.78450 1.19922 1.20876 1.18689 1.21797 0.99600 0.94100 0.89477 1.60417 1.19597 1.49840 1.01020 1.22504 0.95275 0.93742 0.89610 1.21635 0.93240 1.01731 1.02000 1.23761 1.00065 0.99151 0.98541 1.22727 1.02530 0.96024 0.95173 1.23050 1.01877 0.96826 0.94303 0.93608 0.94214 0.91558 0.99636 0.99322 0.92943 0.96397 0.92290 0.83608 0.91961 0.90337 0.93495 0.90580 0.92189 0.89255 0.90325 0.90668 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.77 71.98 0.63 -4.05 16 2 C -0.08 -3.23 2.55 -10.79 -0.03 -3.26 16 3 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.47 8.41 25.60 0.22 -30.26 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 9 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.08 2.85 4.52 86.30 0.39 3.24 16 14 N -0.68 -19.86 6.43 -467.56 -3.01 -22.87 16 15 C 0.08 1.93 1.22 4.05 0.00 1.94 16 16 C -0.13 -3.08 8.78 71.98 0.63 -2.45 16 17 C -0.18 -3.79 7.20 31.18 0.22 -3.57 16 18 C -0.13 -2.12 7.74 31.18 0.24 -1.88 16 19 C -0.12 -2.36 7.46 31.12 0.23 -2.12 16 20 H 0.04 1.85 6.95 -2.38 -0.02 1.83 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.07 2.00 6.68 -2.39 -0.02 1.98 16 23 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 24 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 25 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 26 H 0.02 0.65 8.04 -2.39 -0.02 0.63 16 27 H 0.06 2.24 6.27 -2.39 -0.01 2.23 16 28 H 0.34 9.35 6.86 -89.70 -0.61 8.73 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.51 7.34 -2.39 -0.02 1.49 16 31 H 0.05 1.29 6.11 -2.39 -0.01 1.27 16 32 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 33 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.09 1.32 7.64 -2.39 -0.02 1.30 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -63.53 289.62 2.85 -60.69 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.40 Total: 13.06 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.14 Total: -40.16 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.72 Total: -80.62 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -63.53 2.85 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602593820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.804 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds