Wall clock time and date at job start Sun Mar 29 2020 21:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 5 5 C 1.50691 * 109.47514 * 295.00358 * 4 2 1 6 6 H 1.08007 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00516 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 89.99886 * 9 7 5 11 11 H 1.48504 * 109.46987 * 209.99816 * 9 7 5 12 12 H 1.48494 * 109.47222 * 329.99624 * 9 7 5 13 13 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 14 14 N 1.46899 * 109.47254 * 64.99771 * 13 2 1 15 15 C 1.47488 * 110.99898 * 74.02885 * 14 13 2 16 16 C 1.53514 * 87.93091 * 138.70496 * 15 14 13 17 17 C 1.53004 * 114.16785 * 220.32981 * 16 15 14 18 18 C 1.52993 * 114.34414 * 87.63389 * 16 15 14 19 19 C 1.47481 * 111.00017 * 169.99694 * 14 13 2 20 20 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 21 21 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 22 22 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46810 * 55.00222 * 4 2 1 24 24 H 1.08998 * 109.47247 * 175.00091 * 4 2 1 25 25 H 0.97005 * 119.99823 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47153 * 304.99767 * 13 2 1 27 27 H 1.09001 * 109.46832 * 184.99958 * 13 2 1 28 28 H 1.08997 * 113.47402 * 253.47029 * 15 14 13 29 29 H 1.09004 * 113.47408 * 23.93601 * 15 14 13 30 30 H 1.08994 * 109.46974 * 153.84075 * 17 16 15 31 31 H 1.09001 * 109.46935 * 273.83892 * 17 16 15 32 32 H 1.09003 * 109.47261 * 33.84182 * 17 16 15 33 33 H 1.08991 * 109.47537 * 326.07471 * 18 16 15 34 34 H 1.09007 * 109.46692 * 86.07638 * 18 16 15 35 35 H 1.09000 * 109.46953 * 206.07217 * 18 16 15 36 36 H 1.09003 * 113.47525 * 336.07029 * 19 14 13 37 37 H 1.09003 * 113.47345 * 106.47388 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4995 0.5637 5.2496 10 1 0.1724 0.0956 5.7237 11 1 2.5092 0.3539 6.3181 12 1 1.4246 2.0088 4.9162 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4733 1.2534 -2.5905 16 6 2.5425 0.9601 -4.0958 17 6 3.9137 1.2211 -4.7225 18 6 1.3858 1.5478 -4.9066 19 6 2.3222 -0.4916 -3.6478 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -1.7197 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9237 -1.8414 4.7319 26 1 1.6055 -1.7198 -1.2951 27 1 3.1264 -0.7994 -1.2055 28 1 1.9365 2.1713 -2.3512 29 1 3.4394 1.1866 -2.0902 30 1 4.0358 0.5921 -5.6042 31 1 3.9876 2.2696 -5.0110 32 1 4.6944 0.9875 -3.9986 33 1 0.4765 1.5328 -4.3060 34 1 1.6216 2.5755 -5.1834 35 1 1.2356 0.9541 -5.8082 36 1 3.2480 -1.0241 -3.4297 37 1 1.6575 -1.0534 -4.3042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602752305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:55 Heat of formation + Delta-G solvation = 6.729278 kcal Electronic energy + Delta-G solvation = -14351.931802 eV Core-core repulsion = 12129.336590 eV Total energy + Delta-G solvation = -2222.595211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34535 -35.52143 -32.77740 -31.46630 -27.48629 -27.16918 -26.27513 -25.78550 -23.63797 -21.45855 -18.87700 -18.35175 -16.35595 -15.39522 -15.21755 -14.73417 -14.38349 -13.90453 -13.26652 -13.19140 -12.70032 -12.29600 -12.24115 -12.04464 -11.79630 -11.38843 -11.26391 -11.05115 -10.81276 -10.69741 -10.47362 -10.24122 -10.15238 -10.04876 -9.62041 -9.10333 -8.90638 -8.49843 -8.30990 -5.95799 -3.96787 3.34325 3.40373 3.43910 4.29346 4.34762 4.50195 4.83120 5.20006 5.24369 5.39760 5.43736 5.56168 5.60345 5.68997 5.77617 5.82904 5.87322 5.90734 6.05018 6.07216 6.15238 6.19467 6.35878 6.42266 6.54080 6.61927 6.82062 7.07858 7.22958 7.23877 7.46378 7.71475 7.87564 8.04597 8.48982 9.09535 9.66472 11.15820 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.005930 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.562403 B = 4720.724213 C = 4772.132487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.025 3.975 14 N -0.466 5.466 15 C 0.009 3.991 16 C -0.098 4.098 17 C -0.136 4.136 18 C -0.118 4.118 19 C 0.002 3.998 20 H 0.054 0.946 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.259 0.741 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 4.232 -15.677 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.103 4.103 14 N -0.187 5.187 15 C -0.120 4.120 16 C -0.099 4.099 17 C -0.193 4.193 18 C -0.175 4.175 19 C -0.127 4.127 20 H 0.073 0.927 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.411 4.129 -15.466 16.013 hybrid contribution 0.756 0.196 1.122 1.367 sum 0.345 4.325 -14.344 14.986 Atomic orbital electron populations 1.21587 0.95801 1.00510 1.00122 1.21135 0.95912 0.98902 0.93763 0.92818 1.19131 0.95843 0.95570 0.90528 1.21238 1.34479 1.08287 0.90993 0.92603 1.25023 0.95332 0.95115 0.99084 1.69971 1.39144 1.21300 1.23331 0.86628 0.78226 0.80435 0.82927 1.20701 1.21311 1.19918 1.22844 0.97878 0.98176 0.91381 1.68909 1.43290 1.04256 1.02261 1.23901 0.97307 0.96587 0.94224 1.22031 0.95979 0.96561 0.95306 1.21722 0.95481 1.01529 1.00589 1.21444 0.97394 0.99665 0.99034 1.23916 0.98179 0.96010 0.94569 0.92739 0.94042 0.94181 0.96608 0.97011 0.93122 0.91222 0.94693 0.90171 0.91432 0.92531 0.92463 0.92583 0.91420 0.92802 0.92757 0.91767 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.89 37.16 0.33 -2.17 16 2 C -0.08 -1.67 2.38 -90.62 -0.22 -1.89 16 3 H 0.05 1.17 7.55 -51.93 -0.39 0.78 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.03 0.46 4.21 -3.83 -0.02 0.45 16 14 N -0.47 -7.32 5.68 -244.56 -1.39 -8.71 16 15 C 0.01 0.13 6.05 -7.54 -0.05 0.08 16 16 C -0.10 -1.14 1.52 -153.98 -0.23 -1.37 16 17 C -0.14 -1.32 9.29 37.16 0.35 -0.98 16 18 C -0.12 -1.24 9.22 37.15 0.34 -0.90 16 19 C 0.00 0.03 6.87 -7.54 -0.05 -0.02 16 20 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 21 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.03 0.64 7.56 -51.93 -0.39 0.25 16 28 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 29 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 33 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 34 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.83 7.73 -51.93 -0.40 0.42 16 37 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -29.86 294.16 -8.19 -38.05 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.89 Total: -4.47 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -0.06 Total: -19.63 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: -0.65 Total: -35.34 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.86 -8.19 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.775 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds