Wall clock time and date at job start Sun Mar 29 2020 21:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 5 5 C 1.50691 * 109.47514 * 295.00358 * 4 2 1 6 6 H 1.08007 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00516 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46963 * 89.99886 * 9 7 5 11 11 H 1.48504 * 109.46987 * 209.99816 * 9 7 5 12 12 H 1.48494 * 109.47222 * 329.99624 * 9 7 5 13 13 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 14 14 N 1.46899 * 109.47254 * 64.99771 * 13 2 1 15 15 C 1.47488 * 110.99898 * 74.02885 * 14 13 2 16 16 C 1.53514 * 87.93091 * 138.70496 * 15 14 13 17 17 C 1.53004 * 114.16785 * 220.32981 * 16 15 14 18 18 C 1.52993 * 114.34414 * 87.63389 * 16 15 14 19 19 C 1.47481 * 111.00017 * 169.99694 * 14 13 2 20 20 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 21 21 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 22 22 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46810 * 55.00222 * 4 2 1 24 24 H 1.08998 * 109.47247 * 175.00091 * 4 2 1 25 25 H 0.97005 * 119.99823 * 180.02562 * 8 7 5 26 26 H 1.09002 * 109.47153 * 304.99767 * 13 2 1 27 27 H 1.09001 * 109.46832 * 184.99958 * 13 2 1 28 28 H 1.08997 * 113.47402 * 253.47029 * 15 14 13 29 29 H 1.09004 * 113.47408 * 23.93601 * 15 14 13 30 30 H 1.08994 * 109.46974 * 153.84075 * 17 16 15 31 31 H 1.09001 * 109.46935 * 273.83892 * 17 16 15 32 32 H 1.09003 * 109.47261 * 33.84182 * 17 16 15 33 33 H 1.08991 * 109.47537 * 326.07471 * 18 16 15 34 34 H 1.09007 * 109.46692 * 86.07638 * 18 16 15 35 35 H 1.09000 * 109.46953 * 206.07217 * 18 16 15 36 36 H 1.09003 * 113.47525 * 336.07029 * 19 14 13 37 37 H 1.09003 * 113.47345 * 106.47388 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0799 0.9743 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5185 3.8512 9 14 1.4995 0.5637 5.2496 10 1 0.1724 0.0956 5.7237 11 1 2.5092 0.3539 6.3181 12 1 1.4246 2.0088 4.9162 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4733 1.2534 -2.5905 16 6 2.5425 0.9601 -4.0958 17 6 3.9137 1.2211 -4.7225 18 6 1.3858 1.5478 -4.9066 19 6 2.3222 -0.4916 -3.6478 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.6054 -1.7197 1.2952 24 1 3.1263 -0.7993 1.2057 25 1 2.9237 -1.8414 4.7319 26 1 1.6055 -1.7198 -1.2951 27 1 3.1264 -0.7994 -1.2055 28 1 1.9365 2.1713 -2.3512 29 1 3.4394 1.1866 -2.0902 30 1 4.0358 0.5921 -5.6042 31 1 3.9876 2.2696 -5.0110 32 1 4.6944 0.9875 -3.9986 33 1 0.4765 1.5328 -4.3060 34 1 1.6216 2.5755 -5.1834 35 1 1.2356 0.9541 -5.8082 36 1 3.2480 -1.0241 -3.4297 37 1 1.6575 -1.0534 -4.3042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:55 Heat of formation + Delta-G solvation = -11.769006 kcal Electronic energy + Delta-G solvation = -14352.733948 eV Core-core repulsion = 12129.336590 eV Total energy + Delta-G solvation = -2223.397357 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47960 -37.25368 -34.64608 -32.93916 -29.11526 -28.27489 -27.75579 -26.90383 -25.49285 -22.98417 -20.61629 -19.34744 -18.50212 -16.75338 -16.60637 -16.20300 -15.84827 -15.37530 -14.63944 -14.47846 -14.17058 -13.85523 -13.45025 -13.37713 -13.03787 -12.89953 -12.75291 -12.63714 -12.45049 -12.22593 -12.03631 -11.84630 -11.62841 -11.44186 -11.13058 -10.98962 -10.80880 -10.55541 -9.75711 -8.19380 -6.28975 1.38905 1.40240 1.51221 2.40697 3.13499 3.14622 3.35457 3.83687 4.00377 4.15716 4.25938 4.36888 4.49285 4.52327 4.66709 4.72835 4.79942 4.85535 4.87427 4.89283 4.95944 5.09422 5.17525 5.18537 5.24267 5.31642 5.38886 5.42317 5.48569 5.54942 5.56753 5.79110 5.85563 6.13700 6.29490 6.86328 7.39407 8.92834 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.005930 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.562403 B = 4720.724213 C = 4772.132487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 H 0.048 0.952 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.037 3.963 14 N -0.475 5.475 15 C 0.000 4.000 16 C -0.082 4.082 17 C -0.133 4.133 18 C -0.116 4.116 19 C 0.001 3.999 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.036 0.964 23 H -0.010 1.010 24 H -0.015 1.015 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 5.429 -16.797 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.091 4.091 14 N -0.197 5.197 15 C -0.129 4.129 16 C -0.083 4.083 17 C -0.190 4.190 18 C -0.173 4.173 19 C -0.128 4.128 20 H 0.058 0.942 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.008 0.992 24 H 0.003 0.997 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.861 5.333 -16.604 17.461 hybrid contribution 0.913 -0.195 1.433 1.710 sum 0.051 5.138 -15.171 16.018 Atomic orbital electron populations 1.21477 0.94740 1.00401 1.00390 1.20934 0.96649 0.98141 0.93056 0.93307 1.19014 0.94002 0.94683 0.92759 1.21614 1.34524 1.08603 0.92092 0.92253 1.25963 0.95153 0.96115 1.02663 1.70105 1.40211 1.22972 1.24333 0.85485 0.78076 0.79227 0.78511 1.19797 1.20750 1.18803 1.22584 0.97239 0.97859 0.91446 1.68887 1.44046 1.04887 1.01860 1.23989 0.96554 0.95766 0.96570 1.22008 0.97656 0.94930 0.93703 1.21708 0.93848 1.02674 1.00800 1.21444 0.96043 1.00763 0.99061 1.24014 0.98202 0.97305 0.93305 0.94187 0.91878 0.94458 0.99189 0.99672 0.92876 0.91692 0.95325 0.90418 0.92297 0.91051 0.91244 0.93223 0.92926 0.91405 0.91263 0.91674 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 8.89 71.98 0.64 -3.93 16 2 C -0.07 -2.99 2.38 -10.79 -0.03 -3.01 16 3 H 0.05 2.15 7.55 -2.39 -0.02 2.13 16 4 C 0.03 1.80 4.45 29.84 0.13 1.93 16 5 C -0.53 -30.79 8.41 25.60 0.22 -30.57 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 9 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.04 1.37 4.21 86.30 0.36 1.74 16 14 N -0.48 -14.49 5.68 -927.67 -5.27 -19.76 16 15 C 0.00 0.01 6.05 83.58 0.51 0.51 16 16 C -0.08 -1.72 1.52 -51.84 -0.08 -1.80 16 17 C -0.13 -2.24 9.29 71.98 0.67 -1.57 16 18 C -0.12 -2.11 9.22 71.98 0.66 -1.44 16 19 C 0.00 0.01 6.87 83.58 0.57 0.59 16 20 H 0.04 1.70 6.95 -2.39 -0.02 1.69 16 21 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 24 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.03 1.07 7.56 -2.39 -0.02 1.05 16 28 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 29 H 0.06 1.71 7.49 -2.38 -0.02 1.69 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 32 H 0.05 0.91 7.90 -2.39 -0.02 0.89 16 33 H 0.05 1.12 7.93 -2.39 -0.02 1.11 16 34 H 0.07 1.05 8.13 -2.38 -0.02 1.03 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.59 7.73 -2.39 -0.02 1.57 16 37 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 Total: -1.00 -63.99 294.16 2.15 -61.84 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.99 Total: 5.73 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 4.12 Total: -37.20 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -4.98 Total: -77.55 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.99 2.15 -61.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.073 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds