Wall clock time and date at job start Sun Mar 29 2020 21:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47525 * 2 1 4 4 C 1.53004 * 109.47080 * 239.99929 * 2 1 3 5 5 C 1.50706 * 109.46917 * 65.00119 * 4 2 1 6 6 H 1.07997 * 119.99825 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99742 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46687 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47193 * 120.00400 * 9 7 5 12 12 H 1.48499 * 109.46867 * 240.00420 * 9 7 5 13 13 C 1.53002 * 109.47086 * 120.00206 * 2 1 3 14 14 N 1.46893 * 109.47059 * 294.99879 * 13 2 1 15 15 C 1.47479 * 111.00130 * 190.00028 * 14 13 2 16 16 C 1.53517 * 87.99753 * 221.26429 * 15 14 13 17 17 C 1.52996 * 114.16834 * 139.69722 * 16 15 14 18 18 C 1.52994 * 114.17329 * 272.40683 * 16 15 14 19 19 C 1.47486 * 111.00063 * 94.02802 * 14 13 2 20 20 H 1.09007 * 109.47370 * 59.99826 * 1 2 3 21 21 H 1.09003 * 109.47224 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47355 * 300.00013 * 1 2 3 23 23 H 1.08996 * 109.47462 * 184.99874 * 4 2 1 24 24 H 1.08998 * 109.47041 * 305.00415 * 4 2 1 25 25 H 0.97006 * 120.00047 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47027 * 174.99811 * 13 2 1 27 27 H 1.09001 * 109.46958 * 55.00040 * 13 2 1 28 28 H 1.09002 * 113.47562 * 336.06376 * 15 14 13 29 29 H 1.09003 * 113.47677 * 106.46979 * 15 14 13 30 30 H 1.09002 * 109.47085 * 60.00124 * 17 16 15 31 31 H 1.08995 * 109.47271 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.47713 * 300.00640 * 17 16 15 33 33 H 1.09002 * 109.47311 * 59.99566 * 18 16 15 34 34 H 1.08993 * 109.47217 * 180.02562 * 18 16 15 35 35 H 1.09006 * 109.47163 * 300.00001 * 18 16 15 36 36 H 1.09001 * 113.47573 * 253.46865 * 19 14 13 37 37 H 1.08996 * 113.47515 * 23.87978 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4997 0.5635 -5.2496 10 1 0.7432 1.7751 -4.8433 11 1 2.7180 0.9682 -5.9959 12 1 0.6458 -0.2854 -6.1189 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3220 -0.4917 3.6478 16 6 0.9966 -0.3108 4.4010 17 6 0.6623 -1.4521 5.3635 18 6 0.8103 1.0772 5.0169 19 6 0.3812 -0.4659 3.0011 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1262 -0.7995 -1.2057 24 1 1.6053 -1.7198 -1.2952 25 1 2.9236 -1.8417 -4.7318 26 1 3.1263 -0.7995 1.2055 27 1 1.6053 -1.7199 1.2951 28 1 2.6281 -1.5334 3.5514 29 1 3.1221 0.1503 4.0167 30 1 1.4481 -1.5362 6.1142 31 1 -0.2890 -1.2467 5.8542 32 1 0.5896 -2.3869 4.8076 33 1 0.8364 1.8306 4.2296 34 1 -0.1501 1.1209 5.5305 35 1 1.6122 1.2690 5.7299 36 1 -0.4643 0.1984 2.8223 37 1 0.1688 -1.5003 2.7312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602752306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:57 Heat of formation + Delta-G solvation = 8.431802 kcal Electronic energy + Delta-G solvation = -14349.783129 eV Core-core repulsion = 12127.261745 eV Total energy + Delta-G solvation = -2222.521384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37100 -35.51586 -32.77937 -31.45619 -27.50970 -27.14049 -26.74062 -25.50906 -23.54807 -21.47127 -19.14914 -18.11229 -16.33718 -15.42779 -15.20338 -14.99636 -14.39994 -13.80984 -13.28878 -13.09419 -12.65802 -12.49994 -12.11337 -12.02591 -11.75892 -11.59087 -11.30279 -11.08489 -10.85902 -10.74091 -10.39841 -10.27855 -10.12808 -9.97042 -9.61841 -9.04363 -8.92568 -8.50447 -8.30166 -5.94847 -3.95635 3.34072 3.41471 3.46063 4.27929 4.32143 4.51287 4.80463 5.17812 5.22631 5.40737 5.43040 5.53404 5.57482 5.65314 5.75830 5.80767 5.85250 5.88379 6.02106 6.03704 6.14959 6.18782 6.31152 6.41318 6.41426 6.66339 6.80367 7.03463 7.18723 7.24451 7.47394 7.73742 7.90011 8.05909 8.50494 9.11041 9.67688 11.16817 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070494 B = 0.005739 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.100632 B = 4877.510670 C = 5016.613491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.025 3.975 14 N -0.466 5.466 15 C 0.003 3.997 16 C -0.100 4.100 17 C -0.135 4.135 18 C -0.119 4.119 19 C 0.010 3.990 20 H 0.058 0.942 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.258 0.742 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.559 1.091 16.470 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.103 4.103 14 N -0.187 5.187 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.193 4.193 18 C -0.176 4.176 19 C -0.119 4.119 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.390 1.678 16.096 16.535 hybrid contribution -0.183 -0.587 -0.941 1.124 sum -3.573 1.091 15.155 15.609 Atomic orbital electron populations 1.21759 0.96573 1.00157 1.00390 1.21105 0.95093 0.99717 0.93537 0.91913 1.19142 0.96013 0.95392 0.90596 1.21286 1.34371 1.08210 0.90971 0.92512 1.25024 0.95368 0.95109 0.99096 1.69984 1.39295 1.21324 1.23208 0.86575 0.78249 0.80148 0.83287 1.19733 1.21095 1.21121 1.22867 1.00334 0.95271 0.91797 1.68898 1.03357 1.45390 1.01072 1.23903 0.96976 0.99283 0.92493 1.22085 0.97141 0.96438 0.94362 1.21712 1.01324 0.97284 0.98950 1.21447 1.00886 0.94768 1.00472 1.24078 0.95470 0.99508 0.92882 0.92325 0.94405 0.94378 0.96816 0.96841 0.93198 0.91563 0.94379 0.91814 0.90295 0.92492 0.92479 0.92657 0.91359 0.92822 0.92725 0.90038 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.38 37.16 0.31 -2.30 16 2 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 6 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.03 0.46 4.38 -3.83 -0.02 0.45 16 14 N -0.47 -7.34 5.96 -244.33 -1.46 -8.79 16 15 C 0.00 0.03 6.84 -7.54 -0.05 -0.02 16 16 C -0.10 -1.13 1.53 -153.88 -0.24 -1.37 16 17 C -0.13 -1.27 9.30 37.16 0.35 -0.92 16 18 C -0.12 -1.23 9.23 37.15 0.34 -0.89 16 19 C 0.01 0.13 5.28 -7.44 -0.04 0.09 16 20 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.67 5.86 -51.93 -0.30 0.36 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 27 H 0.04 0.69 7.30 -51.93 -0.38 0.31 16 28 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 29 H 0.08 0.99 8.12 -51.93 -0.42 0.56 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 33 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 34 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 1.11 7.10 -51.93 -0.37 0.74 16 37 H 0.07 0.90 7.22 -51.93 -0.37 0.53 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -30.03 290.72 -8.19 -38.23 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -6.75 Total: -4.45 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -0.09 Total: -19.68 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.72 Total: -35.50 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.03 -8.19 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.657 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds