Wall clock time and date at job start Sun Mar 29 2020 21:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47525 * 2 1 4 4 C 1.53004 * 109.47080 * 239.99929 * 2 1 3 5 5 C 1.50706 * 109.46917 * 65.00119 * 4 2 1 6 6 H 1.07997 * 119.99825 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99742 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00263 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46687 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47193 * 120.00400 * 9 7 5 12 12 H 1.48499 * 109.46867 * 240.00420 * 9 7 5 13 13 C 1.53002 * 109.47086 * 120.00206 * 2 1 3 14 14 N 1.46893 * 109.47059 * 294.99879 * 13 2 1 15 15 C 1.47479 * 111.00130 * 190.00028 * 14 13 2 16 16 C 1.53517 * 87.99753 * 221.26429 * 15 14 13 17 17 C 1.52996 * 114.16834 * 139.69722 * 16 15 14 18 18 C 1.52994 * 114.17329 * 272.40683 * 16 15 14 19 19 C 1.47486 * 111.00063 * 94.02802 * 14 13 2 20 20 H 1.09007 * 109.47370 * 59.99826 * 1 2 3 21 21 H 1.09003 * 109.47224 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47355 * 300.00013 * 1 2 3 23 23 H 1.08996 * 109.47462 * 184.99874 * 4 2 1 24 24 H 1.08998 * 109.47041 * 305.00415 * 4 2 1 25 25 H 0.97006 * 120.00047 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47027 * 174.99811 * 13 2 1 27 27 H 1.09001 * 109.46958 * 55.00040 * 13 2 1 28 28 H 1.09002 * 113.47562 * 336.06376 * 15 14 13 29 29 H 1.09003 * 113.47677 * 106.46979 * 15 14 13 30 30 H 1.09002 * 109.47085 * 60.00124 * 17 16 15 31 31 H 1.08995 * 109.47271 * 180.02562 * 17 16 15 32 32 H 1.09000 * 109.47713 * 300.00640 * 17 16 15 33 33 H 1.09002 * 109.47311 * 59.99566 * 18 16 15 34 34 H 1.08993 * 109.47217 * 180.02562 * 18 16 15 35 35 H 1.09006 * 109.47163 * 300.00001 * 18 16 15 36 36 H 1.09001 * 113.47573 * 253.46865 * 19 14 13 37 37 H 1.08996 * 113.47515 * 23.87978 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4997 0.5635 -5.2496 10 1 0.7432 1.7751 -4.8433 11 1 2.7180 0.9682 -5.9959 12 1 0.6458 -0.2854 -6.1189 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.3220 -0.4917 3.6478 16 6 0.9966 -0.3108 4.4010 17 6 0.6623 -1.4521 5.3635 18 6 0.8103 1.0772 5.0169 19 6 0.3812 -0.4659 3.0011 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 3.1262 -0.7995 -1.2057 24 1 1.6053 -1.7198 -1.2952 25 1 2.9236 -1.8417 -4.7318 26 1 3.1263 -0.7995 1.2055 27 1 1.6053 -1.7199 1.2951 28 1 2.6281 -1.5334 3.5514 29 1 3.1221 0.1503 4.0167 30 1 1.4481 -1.5362 6.1142 31 1 -0.2890 -1.2467 5.8542 32 1 0.5896 -2.3869 4.8076 33 1 0.8364 1.8306 4.2296 34 1 -0.1501 1.1209 5.5305 35 1 1.6122 1.2690 5.7299 36 1 -0.4643 0.1984 2.8223 37 1 0.1688 -1.5003 2.7312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:57 Heat of formation + Delta-G solvation = -10.630417 kcal Electronic energy + Delta-G solvation = -14350.609729 eV Core-core repulsion = 12127.261745 eV Total energy + Delta-G solvation = -2223.347984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.48508 -37.23816 -34.64319 -32.92358 -29.09816 -28.30901 -28.07193 -26.68086 -25.39966 -22.94987 -20.82047 -19.15495 -18.51038 -16.78647 -16.53235 -16.24704 -16.16814 -15.16860 -14.56735 -14.37942 -14.20384 -13.87887 -13.48597 -13.37095 -13.08896 -12.86095 -12.77393 -12.70071 -12.44858 -12.25459 -11.96881 -11.81983 -11.66670 -11.39812 -11.09319 -10.98777 -10.75147 -10.55588 -9.74358 -8.19098 -6.28505 1.38891 1.39240 1.52736 2.41016 3.14137 3.14475 3.36154 3.83925 4.04544 4.12518 4.26943 4.37053 4.47356 4.54093 4.64243 4.69224 4.79066 4.84081 4.86966 4.88877 5.00679 5.09362 5.18047 5.18621 5.21536 5.31390 5.39028 5.44743 5.48817 5.55353 5.56946 5.78725 5.87059 6.16689 6.30806 6.87076 7.39907 8.93293 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070494 B = 0.005739 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.100632 B = 4877.510670 C = 5016.613491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 H 0.050 0.950 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.038 3.962 14 N -0.481 5.481 15 C 0.000 4.000 16 C -0.084 4.084 17 C -0.132 4.132 18 C -0.117 4.117 19 C 0.004 3.996 20 H 0.040 0.960 21 H 0.038 0.962 22 H 0.064 0.936 23 H -0.015 1.015 24 H -0.010 1.010 25 H 0.262 0.738 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 1.809 17.642 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.091 4.091 14 N -0.203 5.203 15 C -0.129 4.129 16 C -0.085 4.085 17 C -0.189 4.189 18 C -0.174 4.174 19 C -0.125 4.125 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.082 0.918 23 H 0.004 0.996 24 H 0.008 0.992 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.370 2.403 17.287 17.992 hybrid contribution 0.146 -0.824 -1.265 1.517 sum -4.223 1.579 16.022 16.644 Atomic orbital electron populations 1.21640 0.95046 1.00333 1.00767 1.20911 0.96277 0.98510 0.92976 0.93178 1.19026 0.94101 0.94595 0.92800 1.21650 1.34440 1.08495 0.92106 0.92289 1.25960 0.95188 0.96113 1.02660 1.70112 1.40328 1.22978 1.24265 0.85434 0.78126 0.78861 0.78863 1.18663 1.20435 1.20331 1.22598 0.99573 0.95084 0.91843 1.68863 1.05179 1.45381 1.00895 1.24006 0.98093 0.99472 0.91355 1.22053 0.94922 0.97863 0.93646 1.21693 1.02455 0.96111 0.98662 1.21450 1.02310 0.93456 1.00208 1.24167 0.94585 0.99334 0.94428 0.94046 0.94299 0.91761 0.99621 0.99204 0.92889 0.92525 0.94347 0.91490 0.89772 0.91269 0.91165 0.92936 0.93094 0.91232 0.91510 0.90015 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.38 71.98 0.60 -4.15 16 2 C -0.07 -2.96 2.55 -10.79 -0.03 -2.99 16 3 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.03 1.77 4.45 29.85 0.13 1.90 16 5 C -0.53 -30.87 8.41 25.60 0.22 -30.66 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.39 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.04 1.38 4.38 86.31 0.38 1.76 16 14 N -0.48 -14.72 5.96 -926.92 -5.52 -20.24 16 15 C 0.00 -0.01 6.84 83.58 0.57 0.56 16 16 C -0.08 -1.71 1.53 -51.77 -0.08 -1.79 16 17 C -0.13 -2.08 9.30 71.98 0.67 -1.41 16 18 C -0.12 -2.13 9.23 71.98 0.66 -1.46 16 19 C 0.00 0.09 5.28 83.64 0.44 0.53 16 20 H 0.04 1.75 6.95 -2.38 -0.02 1.73 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 2.18 5.86 -2.39 -0.01 2.16 16 23 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 26 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 27 H 0.04 1.39 7.30 -2.39 -0.02 1.37 16 28 H 0.07 1.60 7.87 -2.39 -0.02 1.58 16 29 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.05 0.87 7.90 -2.39 -0.02 0.85 16 33 H 0.05 1.11 7.92 -2.39 -0.02 1.09 16 34 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 2.07 7.10 -2.39 -0.02 2.05 16 37 H 0.06 1.68 7.22 -2.39 -0.02 1.66 16 Total: -1.00 -64.63 290.72 1.82 -62.81 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.00 Total: 5.34 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.03 Total: -37.36 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -5.24 Total: -78.19 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.63 1.82 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.182 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds