Wall clock time and date at job start Sun Mar 29 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29021 * 124.91287 * 2 1 4 4 C 1.31786 * 117.12507 * 180.02562 * 3 2 1 5 5 C 1.33641 * 114.49506 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.03199 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47217 * 19.99992 * 6 5 4 8 8 C 1.52996 * 109.47066 * 259.99846 * 6 5 4 9 9 N 1.46503 * 109.46656 * 140.00230 * 6 5 4 10 10 C 1.36940 * 119.99597 * 205.00123 * 9 6 5 11 11 H 1.07995 * 120.00211 * 359.97438 * 10 9 6 12 12 C 1.38809 * 119.99830 * 179.97438 * 10 9 6 13 13 N 1.31619 * 120.00062 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00024 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47126 * 90.00486 * 14 12 10 16 16 H 1.48503 * 109.47201 * 209.99998 * 14 12 10 17 17 H 1.48497 * 109.47215 * 330.00208 * 14 12 10 18 18 S 1.70978 * 124.91623 * 180.31965 * 2 1 3 19 19 H 1.08991 * 109.47221 * 89.97524 * 1 2 3 20 20 H 1.09000 * 109.46494 * 209.97370 * 1 2 3 21 21 H 1.08999 * 109.47140 * 329.97030 * 1 2 3 22 22 H 1.08001 * 122.75021 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47150 * 299.99904 * 8 6 5 24 24 H 1.09003 * 109.47059 * 60.00109 * 8 6 5 25 25 H 1.09002 * 109.47075 * 180.02562 * 8 6 5 26 26 H 0.96993 * 120.00582 * 24.99480 * 9 6 5 27 27 H 0.97004 * 120.00133 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3576 -0.8993 -0.0029 7 1 6.0202 -0.1085 0.3486 8 6 5.7549 -1.3036 -1.4239 9 7 5.4688 -2.0599 0.8842 10 6 6.6746 -2.3747 1.4518 11 1 7.5436 -1.7678 1.2452 12 6 6.7799 -3.4741 2.2927 13 7 7.9389 -3.7770 2.8379 14 14 5.2766 -4.5236 2.6507 15 1 5.1832 -5.6134 1.6464 16 1 5.3954 -5.1114 4.0093 17 1 4.0563 -3.6803 2.5811 18 16 2.4857 -1.4020 -0.0078 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3632 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 4.2532 1.7002 -0.0002 23 1 5.0921 -2.0945 -1.7754 24 1 5.6720 -0.4401 -2.0840 25 1 6.7833 -1.6648 -1.4248 26 1 4.6884 -2.6052 1.0696 27 1 8.0125 -4.5450 3.4258 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602958422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:10 Heat of formation + Delta-G solvation = 50.702279 kcal Electronic energy + Delta-G solvation = -11794.876780 eV Core-core repulsion = 9679.849152 eV Total energy + Delta-G solvation = -2115.027628 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.45173 -35.99875 -32.58632 -31.35190 -29.37549 -27.26724 -24.22643 -23.30950 -20.96512 -19.45980 -17.70188 -17.47068 -15.07237 -14.81963 -14.61233 -14.06663 -13.58027 -13.07930 -12.95191 -12.59169 -12.42575 -12.25554 -11.76082 -11.37290 -10.98560 -10.85209 -10.72406 -10.16928 -9.67552 -9.40395 -9.11232 -8.93435 -8.46610 -7.40244 -5.84468 -3.21693 0.97425 1.57554 2.04580 3.06487 3.33307 3.36783 3.41039 4.33146 4.53055 5.11779 5.18034 5.31436 5.38905 5.46059 5.46943 5.80446 5.83502 5.95042 6.10367 6.33504 6.41650 6.58141 6.83561 7.87671 7.94988 8.33354 9.09336 9.82092 10.00111 11.33200 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.040020 B = 0.009876 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.488393 B = 2834.557144 C = 3262.010159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.019 3.981 3 N -0.472 5.472 4 C 0.019 3.981 5 C -0.191 4.191 6 C 0.247 3.753 7 H 0.078 0.922 8 C -0.161 4.161 9 N -0.745 5.745 10 C -0.249 4.249 11 H 0.094 0.906 12 C 0.011 3.989 13 N -0.929 5.929 14 Si 0.875 3.125 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 S 0.120 5.880 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.174 0.826 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.361 0.639 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 5.779 -7.148 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.258 4.258 3 N -0.187 5.187 4 C -0.131 4.131 5 C -0.313 4.313 6 C 0.136 3.864 7 H 0.096 0.904 8 C -0.221 4.221 9 N -0.389 5.389 10 C -0.378 4.378 11 H 0.112 0.888 12 C -0.186 4.186 13 N -0.576 5.576 14 Si 0.705 3.295 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.200 1.200 18 S 0.373 5.627 19 H 0.099 0.901 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.191 0.809 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.195 0.805 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.160 5.226 -7.056 15.821 hybrid contribution -0.318 -0.136 0.393 0.523 sum -13.478 5.089 -6.663 15.873 Atomic orbital electron populations 1.20345 0.85669 1.03808 1.03378 1.26914 1.01512 0.91577 1.05829 1.66223 1.04978 1.31752 1.15747 1.21600 0.90868 0.95799 1.04835 1.26738 1.00678 0.96055 1.07821 1.18714 0.85774 0.90793 0.91150 0.90447 1.22435 1.02604 1.00203 0.96895 1.42900 1.09748 1.30238 1.55969 1.19047 0.87090 1.09827 1.21863 0.88779 1.24636 0.96340 0.98401 0.99210 1.69691 1.22876 1.29598 1.35439 0.86674 0.83691 0.81160 0.77992 1.20736 1.21380 1.20037 1.84036 0.98003 1.12445 1.68214 0.90058 0.90427 0.89688 0.80888 0.93387 0.93640 0.91324 0.80538 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.46 36.01 0.38 -0.35 15 2 C 0.02 0.28 7.39 -13.46 -0.10 0.18 15 3 N -0.47 -7.72 10.54 -11.86 -0.13 -7.85 15 4 C 0.02 0.31 11.24 -19.18 -0.22 0.10 15 5 C -0.19 -3.35 5.51 -35.92 -0.20 -3.55 15 6 C 0.25 4.80 3.35 -69.08 -0.23 4.56 15 7 H 0.08 1.50 8.07 -51.93 -0.42 1.08 15 8 C -0.16 -2.79 9.47 37.16 0.35 -2.44 15 9 N -0.74 -17.66 4.91 -54.55 -0.27 -17.93 15 10 C -0.25 -6.92 10.41 -15.06 -0.16 -7.07 15 11 H 0.09 2.76 8.06 -52.49 -0.42 2.34 15 12 C 0.01 0.31 5.50 -17.43 -0.10 0.21 15 13 N -0.93 -28.86 13.97 55.49 0.78 -28.08 15 14 Si 0.88 21.98 27.73 -169.99 -4.71 17.27 15 15 H -0.28 -6.96 7.11 56.52 0.40 -6.55 15 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 17 H -0.27 -6.56 6.52 56.52 0.37 -6.19 15 18 S 0.12 1.92 22.25 -107.50 -2.39 -0.48 15 19 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.08 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.17 2.42 8.06 -52.49 -0.42 2.00 15 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 26 H 0.36 8.53 4.81 -40.82 -0.20 8.33 15 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 LS Contribution 249.64 15.07 3.76 3.76 Total: -1.00 -31.38 249.64 -6.40 -37.77 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.17 Total: 3.89 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.27 Total: -8.36 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.38 Total: -53.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.39 Total: -0.48 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.38 -6.40 -37.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602958422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.477 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds