Wall clock time and date at job start Sun Mar 29 2020 21:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29021 * 124.91287 * 2 1 4 4 C 1.31786 * 117.12507 * 180.02562 * 3 2 1 5 5 C 1.33641 * 114.49506 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.03199 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47217 * 19.99992 * 6 5 4 8 8 C 1.52996 * 109.47066 * 259.99846 * 6 5 4 9 9 N 1.46503 * 109.46656 * 140.00230 * 6 5 4 10 10 C 1.36940 * 119.99597 * 205.00123 * 9 6 5 11 11 H 1.07995 * 120.00211 * 359.97438 * 10 9 6 12 12 C 1.38809 * 119.99830 * 179.97438 * 10 9 6 13 13 N 1.31619 * 120.00062 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00024 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47126 * 90.00486 * 14 12 10 16 16 H 1.48503 * 109.47201 * 209.99998 * 14 12 10 17 17 H 1.48497 * 109.47215 * 330.00208 * 14 12 10 18 18 S 1.70978 * 124.91623 * 180.31965 * 2 1 3 19 19 H 1.08991 * 109.47221 * 89.97524 * 1 2 3 20 20 H 1.09000 * 109.46494 * 209.97370 * 1 2 3 21 21 H 1.08999 * 109.47140 * 329.97030 * 1 2 3 22 22 H 1.08001 * 122.75021 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47150 * 299.99904 * 8 6 5 24 24 H 1.09003 * 109.47059 * 60.00109 * 8 6 5 25 25 H 1.09002 * 109.47075 * 180.02562 * 8 6 5 26 26 H 0.96993 * 120.00582 * 24.99480 * 9 6 5 27 27 H 0.97004 * 120.00133 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0015 6 6 5.3576 -0.8993 -0.0029 7 1 6.0202 -0.1085 0.3486 8 6 5.7549 -1.3036 -1.4239 9 7 5.4688 -2.0599 0.8842 10 6 6.6746 -2.3747 1.4518 11 1 7.5436 -1.7678 1.2452 12 6 6.7799 -3.4741 2.2927 13 7 7.9389 -3.7770 2.8379 14 14 5.2766 -4.5236 2.6507 15 1 5.1832 -5.6134 1.6464 16 1 5.3954 -5.1114 4.0093 17 1 4.0563 -3.6803 2.5811 18 16 2.4857 -1.4020 -0.0078 19 1 -0.3633 0.0004 -1.0276 20 1 -0.3632 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 4.2532 1.7002 -0.0002 23 1 5.0921 -2.0945 -1.7754 24 1 5.6720 -0.4401 -2.0840 25 1 6.7833 -1.6648 -1.4248 26 1 4.6884 -2.6052 1.0696 27 1 8.0125 -4.5450 3.4258 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602958422.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:09 Heat of formation + Delta-G solvation = 29.371044 kcal Electronic energy + Delta-G solvation = -11795.801772 eV Core-core repulsion = 9679.849152 eV Total energy + Delta-G solvation = -2115.952620 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.68782 -37.68730 -34.42420 -32.74011 -31.05486 -28.50307 -25.92497 -24.72531 -22.57268 -20.93977 -19.43786 -18.84892 -16.65826 -16.50604 -15.86987 -15.67363 -14.92786 -14.65467 -14.36309 -14.08202 -13.85693 -13.25843 -13.21107 -12.89585 -12.77227 -12.39353 -12.32818 -11.90999 -11.84878 -11.12779 -10.62488 -10.23016 -9.72900 -9.41415 -8.06205 -5.41449 -0.24937 0.35563 0.81086 1.34187 1.36233 1.43199 1.83507 2.44245 3.24280 3.27572 3.52109 3.85846 4.16965 4.41176 4.49710 4.61212 4.68512 4.71121 4.92454 5.02542 5.07876 5.27755 5.38763 5.72182 6.16536 6.73076 7.00387 7.73778 7.92718 9.14683 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.040020 B = 0.009876 C = 0.008582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.488393 B = 2834.557144 C = 3262.010159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.040 3.960 3 N -0.495 5.495 4 C 0.029 3.971 5 C -0.222 4.222 6 C 0.244 3.756 7 H 0.072 0.928 8 C -0.151 4.151 9 N -0.750 5.750 10 C -0.232 4.232 11 H 0.066 0.934 12 C -0.056 4.056 13 N -0.979 5.979 14 Si 0.938 3.062 15 H -0.273 1.273 16 H -0.291 1.291 17 H -0.255 1.255 18 S 0.111 5.889 19 H 0.104 0.896 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.190 0.810 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.363 0.637 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.705 6.258 -7.931 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.238 4.238 3 N -0.210 5.210 4 C -0.121 4.121 5 C -0.344 4.344 6 C 0.134 3.866 7 H 0.090 0.910 8 C -0.211 4.211 9 N -0.394 5.394 10 C -0.363 4.363 11 H 0.084 0.916 12 C -0.248 4.248 13 N -0.629 5.629 14 Si 0.765 3.235 15 H -0.199 1.199 16 H -0.218 1.218 17 H -0.180 1.180 18 S 0.365 5.635 19 H 0.122 0.878 20 H 0.115 0.885 21 H 0.114 0.886 22 H 0.207 0.793 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.196 0.804 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.965 5.737 -7.882 18.706 hybrid contribution 0.482 -0.144 0.561 0.753 sum -15.484 5.593 -7.321 18.017 Atomic orbital electron populations 1.20620 0.82368 1.05250 1.05285 1.27748 1.03231 0.90353 1.02489 1.66340 1.04933 1.32243 1.17472 1.21905 0.91430 0.95876 1.02895 1.26377 1.00059 0.96838 1.11118 1.18784 0.87461 0.89169 0.91155 0.91007 1.22280 1.01301 1.01388 0.96106 1.42906 1.08219 1.31783 1.56522 1.19022 0.87836 1.08707 1.20746 0.91579 1.25391 0.99276 1.00220 0.99890 1.69856 1.25328 1.30617 1.37070 0.85654 0.80721 0.79621 0.77513 1.19929 1.21790 1.17974 1.84009 0.97729 1.13157 1.68561 0.87755 0.88521 0.88648 0.79299 0.93263 0.90721 0.93120 0.80361 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.46 71.24 0.75 -0.47 15 2 C 0.04 1.03 7.39 88.52 0.65 1.69 15 3 N -0.49 -14.82 10.54 -191.44 -2.02 -16.84 15 4 C 0.03 0.89 11.24 83.66 0.94 1.83 15 5 C -0.22 -7.42 5.51 24.64 0.14 -7.28 15 6 C 0.24 9.29 3.35 44.25 0.15 9.44 15 7 H 0.07 2.78 8.07 -2.39 -0.02 2.76 15 8 C -0.15 -5.07 9.47 71.98 0.68 -4.39 15 9 N -0.75 -35.19 4.91 -326.50 -1.60 -36.79 15 10 C -0.23 -13.12 10.41 84.03 0.87 -12.24 15 11 H 0.07 4.02 8.06 -2.91 -0.02 4.00 15 12 C -0.06 -3.28 5.50 84.86 0.47 -2.81 15 13 N -0.98 -62.35 13.97 21.65 0.30 -62.05 15 14 Si 0.94 45.31 27.73 68.60 1.90 47.21 15 15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 15 16 H -0.29 -14.17 7.11 99.48 0.71 -13.46 15 17 H -0.25 -11.34 6.52 99.48 0.65 -10.69 15 18 S 0.11 3.30 22.25 -56.49 -1.26 2.04 15 19 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.10 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.19 4.92 8.06 -2.91 -0.02 4.89 15 23 H 0.05 1.62 8.14 -2.38 -0.02 1.60 15 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.36 16.62 4.81 -92.71 -0.45 16.17 15 27 H 0.26 15.73 8.31 -92.71 -0.77 14.95 15 Total: -1.00 -67.37 249.64 2.63 -64.74 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.66 Total: 15.93 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.65 Total: -14.24 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.32 Total: -115.68 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.26 Total: 2.04 kcal Total: -67.37 2.63 -64.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602958422.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.107 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds