Wall clock time and date at job start Sun Mar 29 2020 21:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46623 * 2 1 4 4 N 1.46902 * 109.46852 * 119.99830 * 2 1 3 5 5 C 1.46900 * 111.00207 * 307.39152 * 4 2 1 6 6 C 1.52991 * 109.47247 * 201.66854 * 5 4 2 7 7 C 1.52998 * 109.47328 * 179.40721 * 6 5 4 8 8 C 1.50694 * 109.47250 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00505 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00140 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99603 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00312 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46739 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47044 * 119.99890 * 12 10 8 15 15 H 1.48495 * 109.47367 * 240.00233 * 12 10 8 16 16 C 1.46903 * 110.99821 * 71.34858 * 4 2 1 17 17 C 1.53003 * 117.49648 * 233.44722 * 16 4 2 18 18 C 1.52999 * 117.49653 * 164.82762 * 16 4 2 19 19 H 1.08997 * 109.47272 * 300.00277 * 1 2 3 20 20 H 1.09003 * 109.46760 * 60.00489 * 1 2 3 21 21 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47102 * 240.00214 * 2 1 3 23 23 H 1.09001 * 109.46465 * 184.26098 * 3 2 1 24 24 H 1.08999 * 109.47024 * 304.25407 * 3 2 1 25 25 H 1.09002 * 109.47051 * 64.26294 * 3 2 1 26 26 H 1.08998 * 109.46592 * 81.66609 * 5 4 2 27 27 H 1.09004 * 109.46966 * 321.67318 * 5 4 2 28 28 H 1.09007 * 109.47038 * 299.40317 * 6 5 4 29 29 H 1.09000 * 109.47373 * 59.40213 * 6 5 4 30 30 H 1.09007 * 109.46731 * 299.99784 * 7 6 5 31 31 H 1.09000 * 109.47308 * 59.99453 * 7 6 5 32 32 H 0.97009 * 119.99358 * 180.02562 * 11 10 8 33 33 H 1.08993 * 115.54962 * 19.16235 * 16 4 2 34 34 H 1.09000 * 117.49655 * 0.02562 * 17 16 4 35 35 H 1.08999 * 117.49283 * 145.02572 * 17 16 4 36 36 H 1.08999 * 117.50187 * 214.98411 * 18 16 4 37 37 H 1.09009 * 117.49968 * 359.97422 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4100 -0.1358 2.4145 6 6 2.2894 -0.4638 3.6227 7 6 1.6620 0.1287 4.8861 8 6 2.5285 -0.1939 6.0760 9 1 3.4358 -0.7647 5.9445 10 6 2.1631 0.2398 7.3328 11 7 1.0580 0.9345 7.4931 12 14 3.2369 -0.1606 8.8080 13 1 4.4149 -0.9480 8.3635 14 1 3.6962 1.1008 9.4429 15 1 2.4536 -0.9525 9.7901 16 6 1.7816 -2.1391 1.1062 17 6 1.0320 -2.8075 2.2605 18 6 2.5335 -3.0433 2.0850 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1273 1.4435 -0.0764 24 1 1.6157 1.9779 -0.8494 25 1 1.7403 1.9338 0.9257 26 1 0.4206 -0.5707 2.5565 27 1 1.3203 0.9458 2.3132 28 1 2.3703 -1.5455 3.7302 29 1 3.2820 -0.0380 3.4759 30 1 1.5810 1.2104 4.7786 31 1 0.6694 -0.2971 5.0329 32 1 0.8011 1.2400 8.3773 33 1 1.6044 -2.5225 0.1015 34 1 0.7152 -2.1737 3.0888 35 1 0.3613 -3.6309 2.0151 36 1 2.8506 -4.0217 1.7242 37 1 3.2052 -2.5648 2.7978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:28 Heat of formation + Delta-G solvation = 21.530666 kcal Electronic energy + Delta-G solvation = -14576.153870 eV Core-core repulsion = 12354.200495 eV Total energy + Delta-G solvation = -2221.953375 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35372 -35.21461 -33.80820 -31.71431 -29.51171 -27.11430 -26.47514 -23.30518 -22.04855 -21.07845 -20.19429 -19.04901 -16.57796 -16.14445 -15.21493 -14.65489 -14.37284 -13.81940 -13.30565 -13.17326 -12.54361 -12.38445 -12.02151 -11.78230 -11.72265 -11.36345 -11.20047 -10.93759 -10.79350 -10.72145 -10.45610 -10.28020 -10.21655 -9.98613 -9.42917 -9.17514 -8.99197 -8.30008 -7.76666 -5.95823 -3.97303 3.33807 3.41138 3.45891 3.93555 4.34298 4.50521 4.96167 5.16470 5.21805 5.26381 5.39087 5.40145 5.43365 5.58744 5.70882 5.81074 5.93854 5.95104 5.98625 6.03152 6.14367 6.24823 6.36147 6.39609 6.48298 6.56051 6.81586 6.91020 7.24662 7.49550 7.51401 7.74429 7.89408 8.05507 8.49465 9.10275 9.66558 11.15661 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038304 B = 0.007178 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.822712 B = 3899.650434 C = 4249.302345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.078 3.922 3 C -0.145 4.145 4 N -0.502 5.502 5 C 0.046 3.954 6 C -0.118 4.118 7 C 0.022 3.978 8 C -0.515 4.515 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.020 3.980 17 C -0.218 4.218 18 C -0.176 4.176 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -3.601 -14.326 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 C -0.203 4.203 4 N -0.223 5.223 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.015 4.015 8 C -0.553 4.553 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.718 3.282 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.089 4.089 17 C -0.256 4.256 18 C -0.214 4.214 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.041 -3.412 -14.183 14.588 hybrid contribution -0.416 -0.329 0.872 1.021 sum -0.457 -3.741 -13.311 13.834 Atomic orbital electron populations 1.22518 0.97628 1.01872 1.02241 1.21715 0.92626 0.95541 0.93210 1.21868 1.01684 0.94934 1.01764 1.62154 1.57035 1.00740 1.02398 1.22507 0.96795 0.99244 0.89476 1.21990 0.98576 1.01305 0.93695 1.19069 0.95817 0.95916 0.90726 1.21294 1.08032 1.33846 0.92175 0.92665 1.25029 0.95211 0.95293 0.99013 1.69984 1.23378 1.37590 1.22711 0.86564 0.80666 0.78077 0.82881 1.19723 1.21065 1.21076 1.22517 1.04145 0.87874 0.94393 1.23646 0.95215 1.03826 1.02918 1.23304 0.95087 0.99838 1.03163 0.91969 0.92677 0.92781 0.90683 0.92021 0.92701 0.91992 0.94108 0.91215 0.91875 0.92913 0.96872 0.96974 0.93169 0.87807 0.86646 0.89690 0.89495 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.56 37.16 0.32 -1.89 16 2 C 0.08 1.00 2.84 -67.71 -0.19 0.80 16 3 C -0.15 -1.78 9.26 37.16 0.34 -1.44 16 4 N -0.50 -7.73 4.57 -218.72 -1.00 -8.73 16 5 C 0.05 0.82 3.06 -3.83 -0.01 0.81 16 6 C -0.12 -2.50 4.26 -26.74 -0.11 -2.62 16 7 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.02 0.29 5.25 -67.71 -0.36 -0.07 16 17 C -0.22 -3.26 8.92 -26.73 -0.24 -3.50 16 18 C -0.18 -2.60 9.63 -26.73 -0.26 -2.86 16 19 H 0.06 0.83 6.72 -51.93 -0.35 0.48 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.65 7.57 -51.93 -0.39 0.25 16 22 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.85 6.17 -51.93 -0.32 0.53 16 26 H 0.04 0.74 5.64 -51.93 -0.29 0.44 16 27 H 0.07 1.25 5.77 -51.93 -0.30 0.95 16 28 H 0.06 1.32 3.86 -51.92 -0.20 1.12 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.10 1.29 7.84 -51.93 -0.41 0.88 16 34 H 0.12 2.03 4.81 -51.93 -0.25 1.78 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.11 1.86 5.93 -51.92 -0.31 1.55 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -29.84 283.47 -8.22 -38.07 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.16 Total: -0.04 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -1.06 Total: -23.97 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.26 Total: -35.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.84 -8.22 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.598 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds