Wall clock time and date at job start Sun Mar 29 2020 21:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46623 * 2 1 4 4 N 1.46902 * 109.46852 * 119.99830 * 2 1 3 5 5 C 1.46900 * 111.00207 * 307.39152 * 4 2 1 6 6 C 1.52991 * 109.47247 * 201.66854 * 5 4 2 7 7 C 1.52998 * 109.47328 * 179.40721 * 6 5 4 8 8 C 1.50694 * 109.47250 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00505 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00140 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99603 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00312 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46739 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47044 * 119.99890 * 12 10 8 15 15 H 1.48495 * 109.47367 * 240.00233 * 12 10 8 16 16 C 1.46903 * 110.99821 * 71.34858 * 4 2 1 17 17 C 1.53003 * 117.49648 * 233.44722 * 16 4 2 18 18 C 1.52999 * 117.49653 * 164.82762 * 16 4 2 19 19 H 1.08997 * 109.47272 * 300.00277 * 1 2 3 20 20 H 1.09003 * 109.46760 * 60.00489 * 1 2 3 21 21 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47102 * 240.00214 * 2 1 3 23 23 H 1.09001 * 109.46465 * 184.26098 * 3 2 1 24 24 H 1.08999 * 109.47024 * 304.25407 * 3 2 1 25 25 H 1.09002 * 109.47051 * 64.26294 * 3 2 1 26 26 H 1.08998 * 109.46592 * 81.66609 * 5 4 2 27 27 H 1.09004 * 109.46966 * 321.67318 * 5 4 2 28 28 H 1.09007 * 109.47038 * 299.40317 * 6 5 4 29 29 H 1.09000 * 109.47373 * 59.40213 * 6 5 4 30 30 H 1.09007 * 109.46731 * 299.99784 * 7 6 5 31 31 H 1.09000 * 109.47308 * 59.99453 * 7 6 5 32 32 H 0.97009 * 119.99358 * 180.02562 * 11 10 8 33 33 H 1.08993 * 115.54962 * 19.16235 * 16 4 2 34 34 H 1.09000 * 117.49655 * 0.02562 * 17 16 4 35 35 H 1.08999 * 117.49283 * 145.02572 * 17 16 4 36 36 H 1.08999 * 117.50187 * 214.98411 * 18 16 4 37 37 H 1.09009 * 117.49968 * 359.97422 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4100 -0.1358 2.4145 6 6 2.2894 -0.4638 3.6227 7 6 1.6620 0.1287 4.8861 8 6 2.5285 -0.1939 6.0760 9 1 3.4358 -0.7647 5.9445 10 6 2.1631 0.2398 7.3328 11 7 1.0580 0.9345 7.4931 12 14 3.2369 -0.1606 8.8080 13 1 4.4149 -0.9480 8.3635 14 1 3.6962 1.1008 9.4429 15 1 2.4536 -0.9525 9.7901 16 6 1.7816 -2.1391 1.1062 17 6 1.0320 -2.8075 2.2605 18 6 2.5335 -3.0433 2.0850 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1273 1.4435 -0.0764 24 1 1.6157 1.9779 -0.8494 25 1 1.7403 1.9338 0.9257 26 1 0.4206 -0.5707 2.5565 27 1 1.3203 0.9458 2.3132 28 1 2.3703 -1.5455 3.7302 29 1 3.2820 -0.0380 3.4759 30 1 1.5810 1.2104 4.7786 31 1 0.6694 -0.2971 5.0329 32 1 0.8011 1.2400 8.3773 33 1 1.6044 -2.5225 0.1015 34 1 0.7152 -2.1737 3.0888 35 1 0.3613 -3.6309 2.0151 36 1 2.8506 -4.0217 1.7242 37 1 3.2052 -2.5648 2.7978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608832286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:28 Heat of formation + Delta-G solvation = 3.667532 kcal Electronic energy + Delta-G solvation = -14576.928473 eV Core-core repulsion = 12354.200495 eV Total energy + Delta-G solvation = -2222.727979 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.58976 -36.32424 -35.81865 -33.63460 -30.89808 -28.41343 -27.97664 -25.15657 -23.33372 -22.16647 -21.98024 -20.29971 -18.41654 -17.83567 -16.62795 -16.29848 -15.79639 -14.95050 -14.74171 -14.51492 -14.22218 -13.84790 -13.61296 -13.38310 -12.93745 -12.76071 -12.63850 -12.42512 -12.40083 -12.09424 -12.02183 -11.79097 -11.55447 -11.32894 -11.17387 -11.07334 -10.90469 -10.54462 -8.98922 -8.20700 -6.31520 1.38699 1.39029 1.52788 2.40125 2.75111 3.12192 3.19729 3.88627 4.06087 4.08617 4.14943 4.21783 4.29772 4.42990 4.52376 4.72590 4.74981 4.77635 4.83012 4.91477 4.94004 4.99387 5.07252 5.14103 5.17483 5.29045 5.36211 5.39097 5.42165 5.55662 5.75833 5.87275 6.14680 6.29254 6.36494 6.85228 7.37619 8.91408 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038304 B = 0.007178 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.822712 B = 3899.650434 C = 4249.302345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.076 3.924 3 C -0.144 4.144 4 N -0.512 5.512 5 C 0.063 3.937 6 C -0.102 4.102 7 C 0.029 3.971 8 C -0.540 4.540 9 H 0.057 0.943 10 C -0.001 4.001 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.027 3.973 17 C -0.224 4.224 18 C -0.180 4.180 19 H 0.041 0.959 20 H 0.076 0.924 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.042 0.958 30 H -0.014 1.014 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.184 -4.625 -15.589 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 C -0.201 4.201 4 N -0.234 5.234 5 C -0.064 4.064 6 C -0.140 4.140 7 C -0.009 4.009 8 C -0.578 4.578 9 H 0.075 0.925 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.082 4.082 17 C -0.262 4.262 18 C -0.218 4.218 19 H 0.060 0.940 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.116 0.884 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.602 -4.438 -15.464 16.099 hybrid contribution -0.635 0.007 1.234 1.387 sum -0.033 -4.431 -14.230 14.904 Atomic orbital electron populations 1.22458 0.96912 1.02066 1.02318 1.21864 0.93223 0.95630 0.92495 1.21870 1.01601 0.94899 1.01743 1.62047 1.57239 1.01791 1.02302 1.22148 0.95752 0.99004 0.89543 1.21757 0.98079 1.01007 0.93111 1.18942 0.94778 0.94244 0.92888 1.21696 1.08484 1.34184 0.93455 0.92515 1.25985 0.96614 0.94878 1.02358 1.70111 1.25084 1.38407 1.23774 0.85406 0.78882 0.78187 0.78637 1.18698 1.20245 1.20192 1.22712 1.03078 0.86974 0.95468 1.23565 0.95881 1.04341 1.02444 1.23307 0.94280 1.01166 1.03029 0.94017 0.90473 0.92527 0.88407 0.92352 0.90231 0.94090 0.94547 0.91799 0.91409 0.93939 0.99515 0.99316 0.92784 0.84810 0.89906 0.87499 0.86811 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 8.56 71.98 0.62 -3.32 16 2 C 0.08 1.77 2.84 44.92 0.13 1.89 16 3 C -0.14 -3.32 9.26 71.98 0.67 -2.65 16 4 N -0.51 -15.19 4.57 -845.88 -3.87 -19.06 16 5 C 0.06 2.28 3.06 86.30 0.26 2.55 16 6 C -0.10 -4.48 4.26 30.59 0.13 -4.35 16 7 C 0.03 1.60 4.97 29.85 0.15 1.75 16 8 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 10 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 11 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 12 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 C 0.03 0.71 5.25 44.92 0.24 0.94 16 17 C -0.22 -6.48 8.92 30.60 0.27 -6.20 16 18 C -0.18 -5.05 9.63 30.59 0.29 -4.75 16 19 H 0.04 1.08 6.72 -2.39 -0.02 1.07 16 20 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 21 H 0.06 1.21 7.57 -2.39 -0.02 1.20 16 22 H 0.10 1.91 7.93 -2.39 -0.02 1.90 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.11 6.17 -2.39 -0.01 1.10 16 26 H 0.04 1.35 5.64 -2.39 -0.01 1.34 16 27 H 0.06 2.38 5.77 -2.38 -0.01 2.36 16 28 H 0.07 2.92 3.86 -2.38 -0.01 2.91 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 33 H 0.13 2.78 7.84 -2.39 -0.02 2.76 16 34 H 0.08 2.98 4.81 -2.39 -0.01 2.97 16 35 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 37 H 0.08 2.81 5.93 -2.38 -0.01 2.80 16 Total: -1.00 -65.05 283.47 2.92 -62.13 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.02 Total: 12.74 kcal Atomic # 6 Polarization: -48.90 SS G_CDS: 3.45 Total: -45.45 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -3.58 Total: -76.86 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -65.05 2.92 -62.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.796 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds