Wall clock time and date at job start Sun Mar 29 2020 21:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47306 * 2 1 4 4 C 1.46900 * 110.99869 * 75.09088 * 3 2 1 5 5 C 1.53005 * 109.46892 * 196.31145 * 4 3 2 6 6 C 1.53001 * 109.46944 * 175.60360 * 5 4 3 7 7 C 1.50707 * 109.46946 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99755 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99906 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00319 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99824 * 11 9 7 13 13 H 1.48498 * 109.47186 * 209.99828 * 11 9 7 14 14 H 1.48498 * 109.46893 * 329.99791 * 11 9 7 15 15 C 1.46899 * 111.00159 * 199.04540 * 3 2 1 16 16 C 1.53776 * 113.61296 * 155.17854 * 15 3 2 17 17 C 1.53954 * 87.02176 * 220.04834 * 16 15 3 18 18 C 1.53781 * 113.61164 * 57.57317 * 15 3 2 19 19 H 1.09007 * 109.47290 * 293.98408 * 1 2 3 20 20 H 1.08996 * 109.47379 * 53.98388 * 1 2 3 21 21 H 1.09004 * 109.47418 * 173.98508 * 1 2 3 22 22 H 1.09001 * 109.47396 * 239.99295 * 2 1 3 23 23 H 1.09010 * 109.47166 * 119.99625 * 2 1 3 24 24 H 1.08995 * 109.47606 * 316.30812 * 4 3 2 25 25 H 1.09001 * 109.47032 * 76.31784 * 4 3 2 26 26 H 1.08997 * 109.47061 * 295.60508 * 5 4 3 27 27 H 1.09003 * 109.46963 * 55.60248 * 5 4 3 28 28 H 1.08996 * 109.46925 * 299.99328 * 6 5 4 29 29 H 1.08994 * 109.47630 * 60.00250 * 6 5 4 30 30 H 0.96998 * 120.00286 * 179.97438 * 10 9 7 31 31 H 1.08999 * 112.85038 * 286.38252 * 15 3 2 32 32 H 1.09001 * 113.62044 * 334.56990 * 16 15 3 33 33 H 1.09002 * 113.61491 * 105.47624 * 16 15 3 34 34 H 1.08999 * 113.54191 * 270.81663 * 17 16 15 35 35 H 1.09001 * 113.66524 * 139.93123 * 17 16 15 36 36 H 1.09002 * 113.61702 * 254.52469 * 18 15 3 37 37 H 1.09001 * 113.61523 * 25.35176 * 18 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8625 1.9989 1.3253 5 6 1.9900 3.5186 1.2017 6 6 1.7179 4.1655 2.5612 7 6 1.8429 5.6624 2.4393 8 1 2.0920 6.1077 1.4875 9 6 1.6393 6.4633 3.5430 10 7 1.3354 5.9210 4.7020 11 14 1.7949 8.3187 3.3921 12 1 0.4750 8.8989 3.0366 13 1 2.2516 8.8841 4.6870 14 1 2.7819 8.6480 2.3326 15 6 3.4174 1.4492 -0.4475 16 6 3.8110 2.8105 -1.0447 17 6 4.6081 2.0256 -2.1024 18 6 3.6437 0.8551 -1.8478 19 1 -0.3634 0.4177 0.9390 20 1 -0.3634 0.6042 -0.8312 21 1 -0.3634 -1.0220 -0.1077 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.8811 1.7483 1.7278 25 1 2.6365 1.6226 1.9941 26 1 2.9977 3.7731 0.8734 27 1 1.2670 3.8859 0.4733 28 1 0.7101 3.9110 2.8894 29 1 2.4408 3.7983 3.2896 30 1 1.1925 6.4845 5.4785 31 1 4.1189 1.0815 0.3013 32 1 2.9689 3.3667 -1.4566 33 1 4.4351 3.4128 -0.3846 34 1 5.6361 1.8166 -1.8063 35 1 4.5323 2.4433 -3.1064 36 1 4.1329 -0.1188 -1.8351 37 1 2.7553 0.8744 -2.4791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610001952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:37 Heat of formation + Delta-G solvation = 1.835168 kcal Electronic energy + Delta-G solvation = -14342.024484 eV Core-core repulsion = 12119.217048 eV Total energy + Delta-G solvation = -2222.807436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28621 -35.72047 -33.67079 -31.68461 -29.53758 -26.63553 -25.31662 -24.12340 -22.83712 -20.89915 -19.87051 -19.07741 -16.34162 -15.89612 -15.50159 -14.71107 -14.41467 -14.05221 -13.64029 -13.03170 -12.55832 -12.23615 -12.20130 -11.78815 -11.68582 -11.35871 -11.31801 -10.96472 -10.84655 -10.67431 -10.47880 -10.35842 -10.12345 -10.03215 -9.43576 -9.16888 -8.99267 -8.28760 -7.98867 -5.94474 -3.96096 3.35412 3.41255 3.45009 4.21337 4.51345 4.73789 4.83202 5.06653 5.07786 5.22670 5.41301 5.43636 5.66924 5.67853 5.76338 5.83762 5.93043 5.95239 6.00539 6.06538 6.14192 6.25354 6.34946 6.42727 6.50528 6.58987 6.82285 6.93421 7.25175 7.49715 7.55413 7.75855 7.92470 8.07143 8.50950 9.11460 9.67577 11.17099 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.006897 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.175015 B = 4059.000985 C = 4659.076842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.055 3.945 5 C -0.105 4.105 6 C 0.021 3.979 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.056 3.944 16 C -0.121 4.121 17 C -0.145 4.145 18 C -0.131 4.131 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -10.993 -11.100 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.253 5.253 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.017 4.017 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.053 4.053 16 C -0.159 4.159 17 C -0.183 4.183 18 C -0.169 4.169 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.806 -10.693 -11.243 15.768 hybrid contribution 0.532 0.547 0.758 1.076 sum 3.338 -10.146 -10.485 14.967 Atomic orbital electron populations 1.21769 0.95152 1.00766 1.02703 1.22013 0.96040 0.89776 1.00056 1.62381 1.18223 1.16475 1.28204 1.22330 1.00280 0.97248 0.87361 1.21711 1.00890 0.91094 1.00618 1.19084 0.96705 0.94929 0.90940 1.21266 1.46899 0.91950 0.95266 0.92700 1.25028 0.95467 0.98625 0.95433 1.69971 1.48548 1.35151 1.00075 0.86616 0.78333 0.85866 0.77327 1.20689 1.21297 1.19891 1.23135 0.89148 0.98046 0.94925 1.23044 0.99743 0.95914 0.97199 1.22799 0.98117 0.97742 0.99685 1.22988 0.99627 0.97316 0.96945 0.92580 0.91921 0.92973 0.91385 0.95409 0.91358 0.95601 0.92924 0.92829 0.96811 0.96994 0.93109 0.92302 0.89022 0.91310 0.90657 0.91470 0.92317 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.93 37.15 0.37 -1.45 16 2 C 0.05 0.65 5.61 -3.83 -0.02 0.63 16 3 N -0.53 -8.23 4.39 -225.67 -0.99 -9.22 16 4 C 0.05 1.01 4.80 -3.82 -0.02 0.99 16 5 C -0.11 -2.26 4.66 -26.73 -0.12 -2.39 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.06 0.80 3.12 -66.90 -0.21 0.59 16 16 C -0.12 -1.73 5.64 -25.83 -0.15 -1.88 16 17 C -0.15 -1.66 8.09 -25.83 -0.21 -1.87 16 18 C -0.13 -1.52 6.33 -25.92 -0.16 -1.68 16 19 H 0.06 0.76 6.90 -51.93 -0.36 0.40 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.80 6.65 -51.93 -0.35 0.45 16 23 H 0.03 0.37 8.01 -51.92 -0.42 -0.05 16 24 H 0.07 1.26 6.58 -51.93 -0.34 0.92 16 25 H 0.03 0.48 7.98 -51.93 -0.41 0.07 16 26 H 0.05 1.11 5.48 -51.93 -0.28 0.82 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.07 1.04 7.34 -51.93 -0.38 0.66 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -30.08 290.63 -8.69 -38.77 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.72 Total: -3.75 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.07 Total: -20.41 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.26 Total: -36.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.08 -8.69 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610001952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.606 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds