Wall clock time and date at job start Sun Mar 29 2020 21:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47306 * 2 1 4 4 C 1.46900 * 110.99869 * 75.09088 * 3 2 1 5 5 C 1.53005 * 109.46892 * 196.31145 * 4 3 2 6 6 C 1.53001 * 109.46944 * 175.60360 * 5 4 3 7 7 C 1.50707 * 109.46946 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99755 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99906 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00319 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47154 * 89.99824 * 11 9 7 13 13 H 1.48498 * 109.47186 * 209.99828 * 11 9 7 14 14 H 1.48498 * 109.46893 * 329.99791 * 11 9 7 15 15 C 1.46899 * 111.00159 * 199.04540 * 3 2 1 16 16 C 1.53776 * 113.61296 * 155.17854 * 15 3 2 17 17 C 1.53954 * 87.02176 * 220.04834 * 16 15 3 18 18 C 1.53781 * 113.61164 * 57.57317 * 15 3 2 19 19 H 1.09007 * 109.47290 * 293.98408 * 1 2 3 20 20 H 1.08996 * 109.47379 * 53.98388 * 1 2 3 21 21 H 1.09004 * 109.47418 * 173.98508 * 1 2 3 22 22 H 1.09001 * 109.47396 * 239.99295 * 2 1 3 23 23 H 1.09010 * 109.47166 * 119.99625 * 2 1 3 24 24 H 1.08995 * 109.47606 * 316.30812 * 4 3 2 25 25 H 1.09001 * 109.47032 * 76.31784 * 4 3 2 26 26 H 1.08997 * 109.47061 * 295.60508 * 5 4 3 27 27 H 1.09003 * 109.46963 * 55.60248 * 5 4 3 28 28 H 1.08996 * 109.46925 * 299.99328 * 6 5 4 29 29 H 1.08994 * 109.47630 * 60.00250 * 6 5 4 30 30 H 0.96998 * 120.00286 * 179.97438 * 10 9 7 31 31 H 1.08999 * 112.85038 * 286.38252 * 15 3 2 32 32 H 1.09001 * 113.62044 * 334.56990 * 16 15 3 33 33 H 1.09002 * 113.61491 * 105.47624 * 16 15 3 34 34 H 1.08999 * 113.54191 * 270.81663 * 17 16 15 35 35 H 1.09001 * 113.66524 * 139.93123 * 17 16 15 36 36 H 1.09002 * 113.61702 * 254.52469 * 18 15 3 37 37 H 1.09001 * 113.61523 * 25.35176 * 18 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8625 1.9989 1.3253 5 6 1.9900 3.5186 1.2017 6 6 1.7179 4.1655 2.5612 7 6 1.8429 5.6624 2.4393 8 1 2.0920 6.1077 1.4875 9 6 1.6393 6.4633 3.5430 10 7 1.3354 5.9210 4.7020 11 14 1.7949 8.3187 3.3921 12 1 0.4750 8.8989 3.0366 13 1 2.2516 8.8841 4.6870 14 1 2.7819 8.6480 2.3326 15 6 3.4174 1.4492 -0.4475 16 6 3.8110 2.8105 -1.0447 17 6 4.6081 2.0256 -2.1024 18 6 3.6437 0.8551 -1.8478 19 1 -0.3634 0.4177 0.9390 20 1 -0.3634 0.6042 -0.8312 21 1 -0.3634 -1.0220 -0.1077 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 0.8811 1.7483 1.7278 25 1 2.6365 1.6226 1.9941 26 1 2.9977 3.7731 0.8734 27 1 1.2670 3.8859 0.4733 28 1 0.7101 3.9110 2.8894 29 1 2.4408 3.7983 3.2896 30 1 1.1925 6.4845 5.4785 31 1 4.1189 1.0815 0.3013 32 1 2.9689 3.3667 -1.4566 33 1 4.4351 3.4128 -0.3846 34 1 5.6361 1.8166 -1.8063 35 1 4.5323 2.4433 -3.1064 36 1 4.1329 -0.1188 -1.8351 37 1 2.7553 0.8744 -2.4791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610001952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:37 Heat of formation + Delta-G solvation = -15.760665 kcal Electronic energy + Delta-G solvation = -14342.787496 eV Core-core repulsion = 12119.217048 eV Total energy + Delta-G solvation = -2223.570448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42440 -37.00029 -35.61126 -33.55528 -30.90287 -28.37789 -26.45521 -25.53120 -24.32163 -22.36701 -21.46893 -20.17077 -18.49305 -17.13713 -16.76039 -16.50673 -15.84903 -15.34454 -15.19734 -14.41457 -14.00269 -13.80156 -13.42911 -13.27550 -13.19558 -12.78687 -12.65383 -12.50509 -12.48297 -12.26285 -11.88266 -11.69399 -11.52066 -11.38030 -11.15107 -11.08002 -10.80164 -10.54350 -9.24689 -8.20315 -6.31478 1.38997 1.40900 1.52070 2.40609 3.01150 3.12515 3.68786 3.83940 4.00683 4.02674 4.13546 4.30090 4.35717 4.54013 4.66389 4.69301 4.76519 4.87608 4.89840 4.94143 4.99647 5.05107 5.12927 5.15340 5.18397 5.26152 5.38161 5.42095 5.53180 5.56924 5.76098 5.86584 6.15572 6.30008 6.33894 6.85332 7.37723 8.91845 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.006897 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.175015 B = 4059.000985 C = 4659.076842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.533 5.533 4 C 0.066 3.934 5 C -0.087 4.087 6 C 0.026 3.974 7 C -0.541 4.541 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.966 3.034 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.263 1.263 15 C 0.044 3.956 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.116 4.116 19 H 0.038 0.962 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.047 0.953 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -11.274 -12.787 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.258 5.258 4 C -0.061 4.061 5 C -0.125 4.125 6 C -0.012 4.012 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.064 4.064 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.154 4.154 19 H 0.057 0.943 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.375 -10.990 -12.949 17.316 hybrid contribution 0.348 0.601 1.303 1.477 sum 3.723 -10.388 -11.646 16.044 Atomic orbital electron populations 1.21758 0.94664 1.02163 1.01524 1.22127 0.96440 0.88299 1.01091 1.62343 1.19433 1.18131 1.25850 1.22037 0.99801 0.95167 0.89144 1.21440 1.00689 0.93187 0.97181 1.18984 0.94395 0.94724 0.93083 1.21681 1.47263 0.93269 0.95686 0.92325 1.26003 0.94730 1.04274 0.94898 1.70104 1.49168 1.37317 1.00957 0.85441 0.78842 0.78992 0.77755 1.19673 1.20584 1.18716 1.23307 0.88153 0.98588 0.96391 1.23054 0.99728 0.95971 0.98313 1.22762 0.98321 0.96610 0.99272 1.22914 0.99793 0.98256 0.94392 0.94327 0.92381 0.90418 0.89113 0.95451 0.91878 0.96251 0.92610 0.93414 0.99332 0.99464 0.92766 0.92776 0.90486 0.93017 0.89458 0.90149 0.90268 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.93 71.98 0.71 -2.64 16 2 C 0.05 1.18 5.61 86.30 0.48 1.66 16 3 N -0.53 -16.19 4.39 -867.90 -3.81 -20.01 16 4 C 0.07 2.48 4.80 86.30 0.41 2.89 16 5 C -0.09 -3.85 4.66 30.60 0.14 -3.71 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 10 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 11 Si 0.97 45.37 29.54 68.60 2.03 47.39 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.04 1.20 3.12 45.44 0.14 1.34 16 16 C -0.13 -3.70 5.64 31.18 0.18 -3.53 16 17 C -0.13 -2.68 8.09 31.18 0.25 -2.43 16 18 C -0.12 -2.35 6.33 31.12 0.20 -2.15 16 19 H 0.04 1.02 6.90 -2.38 -0.02 1.01 16 20 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.09 1.84 6.65 -2.39 -0.02 1.83 16 23 H 0.03 0.68 8.01 -2.38 -0.02 0.67 16 24 H 0.06 2.40 6.58 -2.39 -0.02 2.38 16 25 H 0.02 0.74 7.98 -2.39 -0.02 0.72 16 26 H 0.06 2.41 5.48 -2.39 -0.01 2.40 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.05 1.54 8.05 -2.39 -0.02 1.52 16 32 H 0.08 2.36 8.11 -2.39 -0.02 2.34 16 33 H 0.05 1.58 7.34 -2.39 -0.02 1.56 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 Total: -1.00 -65.04 290.63 2.86 -62.18 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.00 Total: 7.08 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.37 Total: -38.44 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.53 Total: -78.20 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.04 2.86 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610001952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.415 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds