Wall clock time and date at job start Sun Mar 29 2020 21:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48509 * 109.46924 * 270.00483 * 3 2 1 5 5 H 1.48499 * 109.47167 * 30.00037 * 3 2 1 6 6 H 1.48494 * 109.47452 * 150.00134 * 3 2 1 7 7 C 1.38797 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99853 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99749 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46902 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47323 * 180.02562 * 12 11 10 14 14 C 1.36890 * 126.39537 * 270.03108 * 13 12 11 15 15 C 1.34669 * 106.81617 * 179.97438 * 14 13 12 16 16 N 1.34134 * 108.02026 * 0.02562 * 15 14 13 17 17 C 1.30493 * 109.25480 * 0.02562 * 16 15 14 18 18 H 0.97003 * 120.00120 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47327 * 60.00476 * 10 9 7 20 20 H 1.08998 * 109.47692 * 299.99758 * 10 9 7 21 21 H 1.09006 * 109.47212 * 60.00129 * 11 10 9 22 22 H 1.09002 * 109.47266 * 300.00357 * 11 10 9 23 23 H 1.09002 * 109.47343 * 60.00395 * 12 11 10 24 24 H 1.08998 * 109.47519 * 299.99774 * 12 11 10 25 25 H 1.07996 * 126.59258 * 359.97438 * 14 13 12 26 26 H 1.08002 * 125.99042 * 180.26007 * 15 14 13 27 27 H 1.08006 * 125.64594 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9793 -5.3242 -0.0017 12 6 3.1513 -6.3077 -0.0024 13 7 2.6376 -7.6797 -0.0026 14 6 2.3526 -8.4405 1.0991 15 6 1.9073 -9.6285 0.6477 16 7 1.9205 -9.5942 -0.6932 17 6 2.3576 -8.4304 -1.0897 18 1 -0.4850 0.8401 0.0004 19 1 3.1251 -3.7318 0.8875 20 1 3.1238 -3.7310 -0.8925 21 1 1.3697 -5.4843 -0.8911 22 1 1.3715 -5.4844 0.8889 23 1 3.7605 -6.1476 0.8872 24 1 3.7594 -6.1477 -0.8928 25 1 2.4636 -8.1448 2.1319 26 1 1.5910 -10.4613 1.2582 27 1 2.4746 -8.1186 -2.1171 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610412361.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:54 Heat of formation + Delta-G solvation = 44.619472 kcal Electronic energy + Delta-G solvation = -11172.330793 eV Core-core repulsion = 9057.039395 eV Total energy + Delta-G solvation = -2115.291398 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.94599 -35.50740 -32.51984 -31.76851 -29.37879 -26.39682 -25.49156 -21.99965 -21.27024 -20.73240 -17.65526 -17.27599 -15.22282 -15.19552 -14.87868 -14.39425 -14.02473 -13.77796 -13.21606 -13.15559 -12.38151 -12.17450 -11.73761 -11.13529 -10.97386 -10.78548 -10.73073 -9.99349 -9.88958 -9.38720 -9.13925 -8.48304 -8.42605 -6.64213 -6.30807 -4.02865 2.11272 2.81802 3.16257 3.16894 3.22454 3.24117 3.46930 4.13698 4.65607 4.75970 4.89586 5.05511 5.06157 5.24791 5.32725 5.42921 5.52492 5.73256 5.74225 6.06923 6.20810 6.38699 6.50307 6.77362 7.22589 7.52343 8.11382 8.28073 9.15429 10.77318 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.095904 B = 0.005078 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.887233 B = 5512.719715 C = 5608.842345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.073 0.927 9 S -0.127 6.127 10 C -0.115 4.115 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.453 5.453 14 C -0.055 4.055 15 C -0.038 4.038 16 N -0.502 5.502 17 C 0.180 3.820 18 H 0.268 0.732 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -11.353 0.998 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.101 5.899 10 C -0.264 4.264 11 C -0.151 4.151 12 C -0.018 4.018 13 N -0.135 5.135 14 C -0.188 4.188 15 C -0.186 4.186 16 N -0.220 5.220 17 C -0.103 4.103 18 H 0.078 0.922 19 H 0.082 0.918 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.189 0.811 26 H 0.184 0.816 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.791 -11.915 0.487 12.851 hybrid contribution 2.070 2.052 0.577 2.971 sum 6.861 -9.863 1.064 12.062 Atomic orbital electron populations 1.70017 1.05955 1.27493 1.46938 1.25030 0.95102 0.99181 0.94470 0.86143 0.79411 0.81417 0.78420 1.20210 1.20693 1.19665 1.22677 0.94517 0.90647 1.58910 0.90854 1.84740 1.08864 0.99403 1.96885 1.23195 1.03404 0.96568 1.03205 1.21658 0.96704 0.92811 1.03960 1.22099 0.97404 0.77659 1.04649 1.45701 1.47761 1.13150 1.06902 1.22767 1.09362 0.93730 0.92980 1.22264 1.07044 0.97922 0.91330 1.70267 1.19802 1.19787 1.12149 1.24988 1.03352 0.88056 0.93865 0.92184 0.91791 0.91724 0.90723 0.90801 0.89031 0.88795 0.81092 0.81635 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.53 13.22 55.49 0.73 -24.80 15 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 15 3 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.52 -14.45 9.50 30.94 0.29 -14.15 15 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 15 9 S -0.13 -3.20 21.44 -107.50 -2.30 -5.51 15 10 C -0.11 -2.09 5.67 37.16 0.21 -1.88 15 11 C -0.11 -1.64 5.54 -26.73 -0.15 -1.79 15 12 C 0.11 1.17 6.15 -4.04 -0.02 1.15 15 13 N -0.45 -5.53 2.75 -118.58 -0.33 -5.86 15 14 C -0.05 -0.65 11.58 -16.56 -0.19 -0.84 15 15 C -0.04 -0.48 11.87 -17.81 -0.21 -0.69 15 16 N -0.50 -7.38 11.25 -14.66 -0.16 -7.55 15 17 C 0.18 2.30 12.56 -90.38 -1.14 1.16 15 18 H 0.27 7.34 8.31 -40.82 -0.34 7.01 15 19 H 0.06 1.14 8.14 -51.91 -0.42 0.72 15 20 H 0.06 1.14 8.14 -51.92 -0.42 0.72 15 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.17 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.17 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.20 1.95 8.06 -52.48 -0.42 1.52 15 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -32.15 257.04 -7.86 -40.01 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.35 Total: -1.04 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.30 Total: -15.15 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.24 Total: -38.20 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.15 -7.86 -40.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610412361.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.631 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds