Wall clock time and date at job start Sun Mar 29 2020 21:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.42462 * 2 1 4 4 C 1.54904 * 110.37746 * 237.68369 * 2 1 3 5 5 C 1.55137 * 101.65325 * 204.10436 * 4 2 1 6 6 C 1.54312 * 103.02375 * 35.65010 * 5 4 2 7 7 H 1.09002 * 109.88568 * 97.12014 * 6 5 4 8 8 C 1.52995 * 110.02792 * 218.23472 * 6 5 4 9 9 N 1.47436 * 107.23242 * 337.71971 * 6 5 4 10 10 C 1.46906 * 110.99898 * 236.73913 * 9 6 5 11 11 C 1.53000 * 109.47072 * 169.99968 * 10 9 6 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47567 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47190 * 89.99331 * 17 15 13 19 19 H 1.48492 * 109.47229 * 209.99680 * 17 15 13 20 20 H 1.48504 * 109.46772 * 329.99990 * 17 15 13 21 21 H 1.09005 * 109.47151 * 297.69074 * 1 2 3 22 22 H 1.09000 * 109.46866 * 57.68716 * 1 2 3 23 23 H 1.08993 * 109.47542 * 177.69011 * 1 2 3 24 24 H 1.08994 * 110.99224 * 86.00963 * 4 2 1 25 25 H 1.08998 * 110.98756 * 322.19631 * 4 2 1 26 26 H 1.09003 * 110.70554 * 277.26207 * 5 4 2 27 27 H 1.09007 * 110.85590 * 154.10594 * 5 4 2 28 28 H 1.09002 * 109.47325 * 177.85258 * 8 6 5 29 29 H 1.09001 * 109.46988 * 297.85353 * 8 6 5 30 30 H 1.09002 * 109.47234 * 57.84852 * 8 6 5 31 31 H 1.08993 * 109.47164 * 289.99822 * 10 9 6 32 32 H 1.08996 * 109.46920 * 49.99856 * 10 9 6 33 33 H 1.09002 * 109.46936 * 299.99708 * 11 10 9 34 34 H 1.08996 * 109.47340 * 60.00144 * 11 10 9 35 35 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 36 36 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 37 37 H 0.96999 * 120.00082 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1996 -0.7356 6 6 3.2535 -1.4806 0.7649 7 1 3.1055 -2.5488 0.9239 8 6 4.4574 -0.9960 1.5751 9 7 2.0447 -0.7408 1.1714 10 6 2.3357 0.1718 2.2852 11 6 1.1372 1.0949 2.5146 12 6 1.4405 2.0458 3.6742 13 6 0.2604 2.9554 3.8998 14 1 -0.6180 2.8646 3.2780 15 6 0.3024 3.9041 4.8993 16 7 1.3722 4.0150 5.6562 17 14 -1.1607 5.0312 5.1794 18 1 -2.0888 4.4044 6.1546 19 1 -0.6873 6.3335 5.7132 20 1 -1.8693 5.2514 3.8930 21 1 -0.3634 0.4776 0.9100 22 1 -0.3633 0.5493 -0.8685 23 1 -0.3634 -1.0267 -0.0414 24 1 2.1389 -0.1272 -2.1000 25 1 1.4515 -1.6488 -1.4396 26 1 4.1942 -0.3889 -0.8728 27 1 3.8149 -2.0998 -1.2501 28 1 4.2728 -1.1640 2.6362 29 1 5.3468 -1.5470 1.2693 30 1 4.6105 0.0684 1.3971 31 1 2.5266 -0.4070 3.1888 32 1 3.2143 0.7701 2.0445 33 1 0.9463 1.6737 1.6110 34 1 0.2586 0.4965 2.7553 35 1 1.6318 1.4673 4.5780 36 1 2.3192 2.6442 3.4331 37 1 1.4016 4.6822 6.3596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:59 Heat of formation + Delta-G solvation = -13.738419 kcal Electronic energy + Delta-G solvation = -14564.816671 eV Core-core repulsion = 12341.333914 eV Total energy + Delta-G solvation = -2223.482757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56294 -34.30669 -32.69022 -32.36204 -29.90094 -27.88741 -26.05116 -24.02901 -22.69289 -20.92870 -19.96960 -18.74116 -16.35368 -15.86915 -15.48658 -14.53916 -14.34605 -14.00205 -13.21277 -12.99739 -12.72760 -12.36247 -12.13077 -11.87824 -11.54360 -11.45148 -11.11021 -11.05140 -10.78471 -10.76307 -10.53499 -10.49662 -10.45708 -9.99074 -9.61970 -9.23227 -8.99683 -8.30936 -7.87711 -5.96378 -3.98252 3.34249 3.40175 3.43732 4.21930 4.49360 4.74775 4.81406 4.98641 5.34332 5.39405 5.46349 5.48152 5.61955 5.72506 5.78628 5.82607 5.87856 5.93925 5.99971 6.09592 6.13558 6.17888 6.39351 6.42413 6.46239 6.62998 6.80115 6.88080 7.19097 7.44074 7.55252 7.72528 7.88140 8.04461 8.48060 9.09034 9.65543 11.15131 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.006757 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.667501 B = 4142.958418 C = 4591.659813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.126 4.126 5 C -0.138 4.138 6 C 0.068 3.932 7 H 0.079 0.921 8 C -0.169 4.169 9 N -0.524 5.524 10 C 0.046 3.954 11 C -0.112 4.112 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -9.651 -11.779 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.074 0.926 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.040 4.040 7 H 0.097 0.903 8 C -0.227 4.227 9 N -0.248 5.248 10 C -0.081 4.081 11 C -0.150 4.150 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.220 -9.897 -11.446 15.471 hybrid contribution -0.060 1.261 0.049 1.263 sum 3.160 -8.637 -11.397 14.645 Atomic orbital electron populations 1.21936 0.94049 1.01768 1.02379 1.22506 0.96216 0.96136 0.88977 0.92628 1.22758 0.95950 1.00208 0.97505 1.22868 0.97446 1.01278 0.96093 1.22376 0.89275 0.99104 0.93257 0.90305 1.22348 0.97696 1.01499 1.01160 1.63790 1.27382 1.26835 1.06811 1.22539 0.98593 0.93828 0.93132 1.21889 0.96099 0.96714 1.00311 1.19076 0.96767 0.93348 0.92385 1.21257 1.01462 1.16837 1.15995 0.92735 1.25025 0.95928 0.97504 0.96056 1.69968 1.28004 1.35150 1.20526 0.86611 0.82905 0.80184 0.78413 1.20659 1.21276 1.19900 0.90727 0.93173 0.92669 0.91360 0.90928 0.91621 0.91322 0.91604 0.92753 0.92133 0.91224 0.94490 0.93087 0.92625 0.96662 0.96928 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.10 37.15 0.34 -1.75 16 2 C 0.07 1.03 2.37 -66.19 -0.16 0.87 16 3 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 4 C -0.13 -1.50 6.50 -24.60 -0.16 -1.66 16 5 C -0.14 -1.58 6.47 -24.91 -0.16 -1.74 16 6 C 0.07 0.90 4.01 -66.73 -0.27 0.64 16 7 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 8 C -0.17 -2.16 7.80 37.15 0.29 -1.87 16 9 N -0.52 -8.31 4.99 -215.54 -1.07 -9.38 16 10 C 0.05 0.84 3.90 -3.82 -0.01 0.83 16 11 C -0.11 -2.40 3.65 -26.73 -0.10 -2.49 16 12 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 21 H 0.07 1.24 5.20 -51.93 -0.27 0.97 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 26 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 27 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.06 0.89 6.87 -51.93 -0.36 0.53 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 31 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 32 H 0.04 0.68 5.86 -51.93 -0.30 0.37 16 33 H 0.05 1.07 5.66 -51.93 -0.29 0.78 16 34 H 0.06 1.21 7.38 -51.93 -0.38 0.82 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.35 8.14 -51.92 -0.42 -0.08 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 281.42 15.07 4.24 4.24 Total: -1.00 -30.00 281.42 -8.34 -38.34 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -6.44 Total: -3.04 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -0.78 Total: -20.46 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.34 Total: -36.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.00 -8.34 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.604 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds