Wall clock time and date at job start Sun Mar 29 2020 21:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.42462 * 2 1 4 4 C 1.54904 * 110.37746 * 237.68369 * 2 1 3 5 5 C 1.55137 * 101.65325 * 204.10436 * 4 2 1 6 6 C 1.54312 * 103.02375 * 35.65010 * 5 4 2 7 7 H 1.09002 * 109.88568 * 97.12014 * 6 5 4 8 8 C 1.52995 * 110.02792 * 218.23472 * 6 5 4 9 9 N 1.47436 * 107.23242 * 337.71971 * 6 5 4 10 10 C 1.46906 * 110.99898 * 236.73913 * 9 6 5 11 11 C 1.53000 * 109.47072 * 169.99968 * 10 9 6 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47567 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99782 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00401 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99940 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47190 * 89.99331 * 17 15 13 19 19 H 1.48492 * 109.47229 * 209.99680 * 17 15 13 20 20 H 1.48504 * 109.46772 * 329.99990 * 17 15 13 21 21 H 1.09005 * 109.47151 * 297.69074 * 1 2 3 22 22 H 1.09000 * 109.46866 * 57.68716 * 1 2 3 23 23 H 1.08993 * 109.47542 * 177.69011 * 1 2 3 24 24 H 1.08994 * 110.99224 * 86.00963 * 4 2 1 25 25 H 1.08998 * 110.98756 * 322.19631 * 4 2 1 26 26 H 1.09003 * 110.70554 * 277.26207 * 5 4 2 27 27 H 1.09007 * 110.85590 * 154.10594 * 5 4 2 28 28 H 1.09002 * 109.47325 * 177.85258 * 8 6 5 29 29 H 1.09001 * 109.46988 * 297.85353 * 8 6 5 30 30 H 1.09002 * 109.47234 * 57.84852 * 8 6 5 31 31 H 1.08993 * 109.47164 * 289.99822 * 10 9 6 32 32 H 1.08996 * 109.46920 * 49.99856 * 10 9 6 33 33 H 1.09002 * 109.46936 * 299.99708 * 11 10 9 34 34 H 1.08996 * 109.47340 * 60.00144 * 11 10 9 35 35 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 36 36 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 37 37 H 0.96999 * 120.00082 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1996 -0.7356 6 6 3.2535 -1.4806 0.7649 7 1 3.1055 -2.5488 0.9239 8 6 4.4574 -0.9960 1.5751 9 7 2.0447 -0.7408 1.1714 10 6 2.3357 0.1718 2.2852 11 6 1.1372 1.0949 2.5146 12 6 1.4405 2.0458 3.6742 13 6 0.2604 2.9554 3.8998 14 1 -0.6180 2.8646 3.2780 15 6 0.3024 3.9041 4.8993 16 7 1.3722 4.0150 5.6562 17 14 -1.1607 5.0312 5.1794 18 1 -2.0888 4.4044 6.1546 19 1 -0.6873 6.3335 5.7132 20 1 -1.8693 5.2514 3.8930 21 1 -0.3634 0.4776 0.9100 22 1 -0.3633 0.5493 -0.8685 23 1 -0.3634 -1.0267 -0.0414 24 1 2.1389 -0.1272 -2.1000 25 1 1.4515 -1.6488 -1.4396 26 1 4.1942 -0.3889 -0.8728 27 1 3.8149 -2.0998 -1.2501 28 1 4.2728 -1.1640 2.6362 29 1 5.3468 -1.5470 1.2693 30 1 4.6105 0.0684 1.3971 31 1 2.5266 -0.4070 3.1888 32 1 3.2143 0.7701 2.0445 33 1 0.9463 1.6737 1.6110 34 1 0.2586 0.4965 2.7553 35 1 1.6318 1.4673 4.5780 36 1 2.3192 2.6442 3.4331 37 1 1.4016 4.6822 6.3596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610710582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:59 Heat of formation + Delta-G solvation = -32.112863 kcal Electronic energy + Delta-G solvation = -14565.613447 eV Core-core repulsion = 12341.333914 eV Total energy + Delta-G solvation = -2224.279533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74072 -36.15848 -34.24332 -33.78247 -31.52544 -29.00481 -27.90028 -25.23891 -24.38906 -22.31386 -21.41086 -20.00512 -18.45444 -17.08099 -16.85550 -16.40659 -15.95843 -15.14451 -14.55247 -14.41917 -14.11160 -13.80431 -13.51455 -13.42002 -13.24861 -12.80952 -12.68821 -12.43514 -12.28263 -12.19313 -11.99237 -11.66359 -11.61001 -11.51242 -11.37835 -11.13789 -11.05781 -10.56270 -9.14125 -8.21026 -6.32308 1.38823 1.40658 1.51747 2.40130 3.03219 3.11893 3.70462 3.79915 4.00562 4.21522 4.25641 4.32707 4.45698 4.49690 4.58067 4.71535 4.75244 4.81348 4.87347 4.94535 4.99097 5.00544 5.10403 5.15563 5.19596 5.23947 5.34788 5.46228 5.49257 5.52392 5.73762 5.84287 6.17267 6.22572 6.30428 6.84281 7.36937 8.91087 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.006757 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.667501 B = 4142.958418 C = 4591.659813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.037 0.963 4 C -0.118 4.118 5 C -0.132 4.132 6 C 0.062 3.938 7 H 0.088 0.912 8 C -0.166 4.166 9 N -0.532 5.532 10 C 0.060 3.940 11 C -0.093 4.093 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.050 0.950 35 H -0.011 1.011 36 H -0.012 1.012 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -10.232 -13.365 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 H 0.055 0.945 4 C -0.156 4.156 5 C -0.170 4.170 6 C -0.046 4.046 7 H 0.106 0.894 8 C -0.224 4.224 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.008 0.992 36 H 0.006 0.994 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.681 -10.494 -13.047 16.957 hybrid contribution 0.142 1.412 0.547 1.521 sum 2.822 -9.082 -12.500 15.707 Atomic orbital electron populations 1.21888 0.93988 1.02174 1.01737 1.22605 0.96339 0.95619 0.90112 0.94532 1.22733 0.96044 1.00361 0.96422 1.22855 0.97226 1.02455 0.94492 1.22530 0.88168 0.99049 0.94817 0.89364 1.22296 0.98735 1.00948 1.00376 1.63768 1.29033 1.26112 1.06739 1.22250 0.96742 0.93570 0.94238 1.21625 0.97236 0.96146 0.98103 1.18975 0.95333 0.93551 0.93256 1.21675 1.02216 1.17653 1.16472 0.92337 1.26000 0.99121 0.99176 0.95573 1.70101 1.30253 1.36010 1.21092 0.85437 0.78947 0.77832 0.78792 1.19685 1.20581 1.18719 0.93501 0.91445 0.91884 0.89763 0.89894 0.91627 0.88781 0.92958 0.90265 0.93515 0.91964 0.94859 0.92858 0.93146 0.99222 0.99355 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.10 71.98 0.66 -3.26 16 2 C 0.06 1.74 2.37 45.38 0.11 1.85 16 3 H 0.04 1.17 7.02 -2.39 -0.02 1.16 16 4 C -0.12 -2.45 6.50 31.98 0.21 -2.24 16 5 C -0.13 -2.61 6.47 31.77 0.21 -2.40 16 6 C 0.06 1.53 4.01 45.26 0.18 1.71 16 7 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 8 C -0.17 -4.06 7.80 71.98 0.56 -3.50 16 9 N -0.53 -16.48 4.99 -835.85 -4.17 -20.65 16 10 C 0.06 2.22 3.90 86.30 0.34 2.56 16 11 C -0.09 -4.10 3.65 30.59 0.11 -3.99 16 12 C 0.03 1.46 4.97 29.85 0.15 1.61 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 16 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 17 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.05 1.55 5.20 -2.38 -0.01 1.54 16 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.58 8.04 -2.39 -0.02 1.57 16 26 H 0.06 1.31 7.85 -2.39 -0.02 1.30 16 27 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.05 1.40 6.87 -2.39 -0.02 1.39 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.26 6.56 -2.39 -0.02 1.25 16 31 H 0.06 2.38 7.32 -2.39 -0.02 2.36 16 32 H 0.03 1.26 5.86 -2.39 -0.01 1.24 16 33 H 0.05 2.30 5.66 -2.39 -0.01 2.28 16 34 H 0.05 2.24 7.38 -2.39 -0.02 2.23 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -64.89 281.42 2.37 -62.52 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.01 Total: 7.82 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.21 Total: -39.00 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.88 Total: -78.56 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.89 2.37 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.411 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds