Wall clock time and date at job start Sun Mar 29 2020 21:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.45490 * 2 1 4 4 C 1.54378 * 110.41615 * 237.58363 * 2 1 3 5 5 C 1.54261 * 105.14884 * 217.41834 * 4 2 1 6 6 C 1.54377 * 105.06063 * 359.94826 * 5 4 2 7 7 H 1.09000 * 110.41321 * 265.07173 * 6 5 4 8 8 C 1.53005 * 110.41260 * 142.74710 * 6 5 4 9 9 N 1.48561 * 104.59506 * 23.85342 * 6 5 4 10 10 C 1.46904 * 110.99860 * 200.95905 * 9 6 5 11 11 C 1.52997 * 109.47164 * 64.90129 * 10 9 6 12 12 C 1.53005 * 109.46939 * 185.63746 * 11 10 9 13 13 C 1.50700 * 109.46795 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00239 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99508 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99781 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47126 * 59.99484 * 17 15 13 19 19 H 1.48499 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46961 * 299.99971 * 17 15 13 21 21 H 1.09003 * 109.46942 * 185.96141 * 1 2 3 22 22 H 1.08998 * 109.47598 * 305.96881 * 1 2 3 23 23 H 1.09002 * 109.46862 * 65.97126 * 1 2 3 24 24 H 1.09005 * 110.32072 * 98.47099 * 4 2 1 25 25 H 1.08998 * 110.32248 * 336.36536 * 4 2 1 26 26 H 1.09005 * 110.32179 * 118.84493 * 5 4 2 27 27 H 1.08999 * 110.32247 * 241.05274 * 5 4 2 28 28 H 1.09004 * 109.46688 * 61.45382 * 8 6 5 29 29 H 1.08998 * 109.47528 * 181.45153 * 8 6 5 30 30 H 1.09000 * 109.47229 * 301.46048 * 8 6 5 31 31 H 1.09005 * 109.46904 * 184.90183 * 10 9 6 32 32 H 1.08996 * 109.47230 * 304.89818 * 10 9 6 33 33 H 1.09000 * 109.46793 * 305.63170 * 11 10 9 34 34 H 1.08997 * 109.47049 * 65.63663 * 11 10 9 35 35 H 1.09004 * 109.46967 * 299.99865 * 12 11 10 36 36 H 1.08991 * 109.46963 * 59.99802 * 12 11 10 37 37 H 0.97003 * 120.00372 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0685 -0.7756 -1.2214 5 6 3.3175 -1.5207 -0.7070 6 6 3.4310 -1.1325 0.7828 7 1 4.1105 -0.2891 0.9052 8 6 3.9102 -2.3268 1.6105 9 7 2.0510 -0.7473 1.1755 10 6 2.0623 0.0998 2.3756 11 6 2.7599 1.4241 2.0586 12 6 2.8969 2.2480 3.3405 13 6 3.5846 3.5521 3.0283 14 1 3.8927 3.7715 2.0168 15 6 3.8195 4.4656 4.0341 16 7 3.4430 4.1991 5.2655 17 14 4.6713 6.0824 3.6470 18 1 3.8676 6.8402 2.6545 19 1 4.8044 6.8820 4.8912 20 1 6.0197 5.8100 3.0876 21 1 -0.3633 -1.0221 0.1067 22 1 -0.3634 0.6036 0.8317 23 1 -0.3633 0.4185 -0.9386 24 1 2.3417 -0.0841 -2.0185 25 1 1.3230 -1.4868 -1.5769 26 1 3.1842 -2.5978 -0.8085 27 1 4.2037 -1.1951 -1.2517 28 1 4.8994 -2.6320 1.2690 29 1 3.9602 -2.0437 2.6619 30 1 3.2126 -3.1557 1.4901 31 1 1.0376 0.2955 2.6919 32 1 2.5982 -0.4107 3.1757 33 1 3.7495 1.2241 1.6477 34 1 2.1697 1.9804 1.3304 35 1 1.9073 2.4479 3.7515 36 1 3.4870 1.6917 4.0686 37 1 3.6086 4.8416 5.9732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:01 Heat of formation + Delta-G solvation = -19.994820 kcal Electronic energy + Delta-G solvation = -14548.967076 eV Core-core repulsion = 12325.213021 eV Total energy + Delta-G solvation = -2223.754055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37539 -34.28343 -32.44328 -32.40148 -29.93773 -28.10551 -25.81731 -23.68737 -23.06999 -21.09737 -20.08374 -18.60594 -16.48733 -15.75839 -14.81415 -14.49602 -14.42702 -14.32040 -13.12642 -12.88447 -12.73909 -12.48732 -12.16537 -11.72381 -11.66721 -11.47292 -11.26464 -10.95147 -10.82720 -10.59766 -10.52608 -10.48495 -10.43814 -10.40308 -9.46570 -9.36891 -9.18610 -8.33867 -7.89102 -5.99083 -4.01821 3.32676 3.37062 3.39536 4.29454 4.46000 4.77051 4.91992 5.16097 5.31728 5.36278 5.55427 5.62413 5.72027 5.74067 5.80312 5.88040 5.90181 5.98723 6.01135 6.07416 6.16213 6.25473 6.34287 6.36594 6.40365 6.49213 6.70425 6.85884 7.12184 7.29347 7.50741 7.67547 7.82843 8.00529 8.43829 9.04964 9.62111 11.11968 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038401 B = 0.006829 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.980416 B = 4099.304283 C = 4215.885295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.046 3.954 3 H 0.068 0.932 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.049 3.951 7 H 0.062 0.938 8 C -0.133 4.133 9 N -0.504 5.504 10 C 0.041 3.959 11 C -0.145 4.145 12 C 0.026 3.974 13 C -0.521 4.521 14 H 0.052 0.948 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -10.741 -10.447 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.059 4.059 7 H 0.080 0.920 8 C -0.191 4.191 9 N -0.228 5.228 10 C -0.087 4.087 11 C -0.184 4.184 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.538 -11.146 -10.124 15.270 hybrid contribution 1.005 1.776 -0.196 2.050 sum -1.532 -9.370 -10.320 14.023 Atomic orbital electron populations 1.21659 0.94318 1.01947 1.01144 1.22790 0.95832 0.97341 0.90288 0.91450 1.22335 0.97372 0.98883 0.97182 1.22330 0.97694 1.00422 0.95262 1.22681 0.91351 0.97797 0.94106 0.92028 1.21676 0.99969 0.97474 0.99964 1.65608 1.17044 1.36979 1.03186 1.22388 1.01114 0.92874 0.92294 1.22240 0.98893 0.95823 1.01412 1.19010 0.96954 0.93890 0.91318 1.21226 1.38223 1.02173 0.94346 0.92972 1.25020 0.95871 0.98413 0.95094 1.69949 1.47300 1.35978 1.00254 0.86681 0.80128 0.83742 0.77592 1.20263 1.21220 1.20289 0.92268 0.92630 0.92808 0.91900 0.91468 0.91419 0.91882 0.92790 0.92567 0.92325 0.91138 0.91158 0.93288 0.93031 0.96630 0.96698 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.34 37.16 0.35 -1.40 16 2 C 0.05 0.67 2.66 -65.98 -0.18 0.49 16 3 H 0.07 1.11 5.39 -51.93 -0.28 0.83 16 4 C -0.12 -1.47 6.55 -25.35 -0.17 -1.63 16 5 C -0.12 -1.46 6.55 -25.35 -0.17 -1.62 16 6 C 0.05 0.71 2.75 -66.07 -0.18 0.53 16 7 H 0.06 1.01 5.86 -51.93 -0.30 0.71 16 8 C -0.13 -1.74 9.32 37.16 0.35 -1.39 16 9 N -0.50 -7.94 5.02 -214.22 -1.08 -9.02 16 10 C 0.04 0.75 5.35 -3.82 -0.02 0.73 16 11 C -0.15 -3.06 4.26 -26.73 -0.11 -3.17 16 12 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -27.32 13.28 55.43 0.74 -26.58 16 17 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 26 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.78 7.42 -51.93 -0.39 0.40 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 32 H 0.07 1.29 7.32 -51.93 -0.38 0.91 16 33 H 0.05 1.04 6.04 -51.93 -0.31 0.72 16 34 H 0.05 1.09 6.25 -51.93 -0.32 0.76 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -29.89 286.56 -8.27 -38.17 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.55 Total: -3.09 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.68 Total: -20.74 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.34 Total: -35.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.89 -8.27 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.172 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds