Wall clock time and date at job start Sun Mar 29 2020 21:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.45490 * 2 1 4 4 C 1.54378 * 110.41615 * 237.58363 * 2 1 3 5 5 C 1.54261 * 105.14884 * 217.41834 * 4 2 1 6 6 C 1.54377 * 105.06063 * 359.94826 * 5 4 2 7 7 H 1.09000 * 110.41321 * 265.07173 * 6 5 4 8 8 C 1.53005 * 110.41260 * 142.74710 * 6 5 4 9 9 N 1.48561 * 104.59506 * 23.85342 * 6 5 4 10 10 C 1.46904 * 110.99860 * 200.95905 * 9 6 5 11 11 C 1.52997 * 109.47164 * 64.90129 * 10 9 6 12 12 C 1.53005 * 109.46939 * 185.63746 * 11 10 9 13 13 C 1.50700 * 109.46795 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00239 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99508 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99781 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47126 * 59.99484 * 17 15 13 19 19 H 1.48499 * 109.47148 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46961 * 299.99971 * 17 15 13 21 21 H 1.09003 * 109.46942 * 185.96141 * 1 2 3 22 22 H 1.08998 * 109.47598 * 305.96881 * 1 2 3 23 23 H 1.09002 * 109.46862 * 65.97126 * 1 2 3 24 24 H 1.09005 * 110.32072 * 98.47099 * 4 2 1 25 25 H 1.08998 * 110.32248 * 336.36536 * 4 2 1 26 26 H 1.09005 * 110.32179 * 118.84493 * 5 4 2 27 27 H 1.08999 * 110.32247 * 241.05274 * 5 4 2 28 28 H 1.09004 * 109.46688 * 61.45382 * 8 6 5 29 29 H 1.08998 * 109.47528 * 181.45153 * 8 6 5 30 30 H 1.09000 * 109.47229 * 301.46048 * 8 6 5 31 31 H 1.09005 * 109.46904 * 184.90183 * 10 9 6 32 32 H 1.08996 * 109.47230 * 304.89818 * 10 9 6 33 33 H 1.09000 * 109.46793 * 305.63170 * 11 10 9 34 34 H 1.08997 * 109.47049 * 65.63663 * 11 10 9 35 35 H 1.09004 * 109.46967 * 299.99865 * 12 11 10 36 36 H 1.08991 * 109.46963 * 59.99802 * 12 11 10 37 37 H 0.97003 * 120.00372 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0685 -0.7756 -1.2214 5 6 3.3175 -1.5207 -0.7070 6 6 3.4310 -1.1325 0.7828 7 1 4.1105 -0.2891 0.9052 8 6 3.9102 -2.3268 1.6105 9 7 2.0510 -0.7473 1.1755 10 6 2.0623 0.0998 2.3756 11 6 2.7599 1.4241 2.0586 12 6 2.8969 2.2480 3.3405 13 6 3.5846 3.5521 3.0283 14 1 3.8927 3.7715 2.0168 15 6 3.8195 4.4656 4.0341 16 7 3.4430 4.1991 5.2655 17 14 4.6713 6.0824 3.6470 18 1 3.8676 6.8402 2.6545 19 1 4.8044 6.8820 4.8912 20 1 6.0197 5.8100 3.0876 21 1 -0.3633 -1.0221 0.1067 22 1 -0.3634 0.6036 0.8317 23 1 -0.3633 0.4185 -0.9386 24 1 2.3417 -0.0841 -2.0185 25 1 1.3230 -1.4868 -1.5769 26 1 3.1842 -2.5978 -0.8085 27 1 4.2037 -1.1951 -1.2517 28 1 4.8994 -2.6320 1.2690 29 1 3.9602 -2.0437 2.6619 30 1 3.2126 -3.1557 1.4901 31 1 1.0376 0.2955 2.6919 32 1 2.5982 -0.4107 3.1757 33 1 3.7495 1.2241 1.6477 34 1 2.1697 1.9804 1.3304 35 1 1.9073 2.4479 3.7515 36 1 3.4870 1.6917 4.0686 37 1 3.6086 4.8416 5.9732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610710583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:01 Heat of formation + Delta-G solvation = -38.064386 kcal Electronic energy + Delta-G solvation = -14549.750631 eV Core-core repulsion = 12325.213021 eV Total energy + Delta-G solvation = -2224.537610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59940 -36.12696 -34.28664 -33.51009 -31.60665 -29.22161 -27.68123 -24.77246 -24.70441 -22.91861 -21.18390 -19.99567 -18.54727 -17.20863 -16.46816 -16.05175 -15.88409 -15.55648 -14.47952 -14.36759 -14.18317 -14.01215 -13.51533 -13.10533 -13.05273 -12.83846 -12.77428 -12.64030 -12.40908 -12.30587 -12.00627 -11.66389 -11.63731 -11.48464 -11.39162 -11.32195 -10.99907 -10.57258 -9.27722 -8.23011 -6.35726 1.36157 1.39392 1.47627 2.37446 3.08183 3.08833 3.67437 3.82989 4.10265 4.13234 4.33177 4.35158 4.48208 4.50996 4.60427 4.69923 4.72025 4.76701 4.89072 4.92931 4.99582 5.05237 5.14885 5.16415 5.24358 5.27896 5.34805 5.39604 5.41484 5.50824 5.67337 5.80069 6.08205 6.13526 6.22242 6.80348 7.33667 8.88005 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038401 B = 0.006829 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.980416 B = 4099.304283 C = 4215.885295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.037 3.963 3 H 0.045 0.955 4 C -0.114 4.114 5 C -0.114 4.114 6 C 0.040 3.960 7 H 0.038 0.962 8 C -0.129 4.129 9 N -0.501 5.501 10 C 0.053 3.947 11 C -0.126 4.126 12 C 0.030 3.970 13 C -0.547 4.547 14 H 0.056 0.944 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.267 1.267 21 H 0.065 0.935 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.051 0.949 35 H -0.009 1.009 36 H -0.010 1.010 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -11.062 -12.336 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 H 0.063 0.937 4 C -0.152 4.152 5 C -0.152 4.152 6 C -0.068 4.068 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.225 5.225 10 C -0.075 4.075 11 C -0.164 4.164 12 C -0.007 4.007 13 C -0.585 4.585 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.192 1.192 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.205 -11.481 -12.030 16.774 hybrid contribution 0.889 1.851 0.407 2.094 sum -1.315 -9.630 -11.623 15.151 Atomic orbital electron populations 1.21637 0.93218 1.02217 1.01554 1.22912 0.96817 0.96426 0.90942 0.93702 1.22338 0.97642 0.99111 0.96150 1.22333 0.98234 1.01446 0.93143 1.22814 0.90032 0.97569 0.96384 0.94370 1.21655 1.01242 0.97035 0.98725 1.65673 1.18042 1.35953 1.02783 1.22151 1.00233 0.91576 0.93574 1.22003 0.99262 0.96619 0.98542 1.18902 0.94778 0.93965 0.93081 1.21650 1.38764 1.03380 0.94726 0.92619 1.25991 0.96433 1.02524 0.94780 1.70084 1.48283 1.37509 1.01352 0.85512 0.79181 0.78670 0.77777 1.19136 1.20497 1.19193 0.91550 0.94286 0.90839 0.90775 0.89847 0.89787 0.90760 0.90940 0.94239 0.91424 0.91489 0.91819 0.93443 0.93031 0.99078 0.99203 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.34 71.98 0.67 -2.51 16 2 C 0.04 1.04 2.66 45.03 0.12 1.16 16 3 H 0.05 1.46 5.39 -2.38 -0.01 1.45 16 4 C -0.11 -2.49 6.55 31.49 0.21 -2.28 16 5 C -0.11 -2.47 6.55 31.49 0.21 -2.26 16 6 C 0.04 1.13 2.75 45.06 0.12 1.25 16 7 H 0.04 1.25 5.86 -2.39 -0.01 1.24 16 8 C -0.13 -3.19 9.32 71.98 0.67 -2.52 16 9 N -0.50 -15.43 5.02 -831.67 -4.17 -19.60 16 10 C 0.05 1.97 5.35 86.30 0.46 2.43 16 11 C -0.13 -5.44 4.26 30.60 0.13 -5.31 16 12 C 0.03 1.67 4.97 29.85 0.15 1.82 16 13 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.00 0.04 5.46 84.66 0.46 0.50 16 16 N -0.93 -57.93 13.28 21.45 0.28 -57.65 16 17 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.07 7.95 -2.39 -0.02 1.06 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.08 1.57 7.86 -2.39 -0.02 1.55 16 26 H 0.08 1.58 7.86 -2.38 -0.02 1.56 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 29 H 0.04 1.09 7.42 -2.39 -0.02 1.07 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.50 7.95 -2.38 -0.02 2.48 16 32 H 0.06 2.42 7.32 -2.39 -0.02 2.40 16 33 H 0.05 2.06 6.04 -2.39 -0.01 2.04 16 34 H 0.05 2.22 6.25 -2.39 -0.01 2.21 16 35 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -64.40 286.56 2.58 -61.82 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.01 Total: 8.09 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.44 Total: -39.72 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -3.89 Total: -77.25 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.40 2.58 -61.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.758 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds