Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.01293 * 2 1 4 4 C 1.54323 * 109.89088 * 121.11641 * 2 1 3 5 5 C 1.55137 * 103.01884 * 141.68975 * 4 2 1 6 6 C 1.54911 * 101.65332 * 324.34934 * 5 4 2 7 7 H 1.09004 * 110.37168 * 278.23611 * 6 5 4 8 8 C 1.53004 * 110.37395 * 155.90022 * 6 5 4 9 9 N 1.47440 * 109.89045 * 238.88748 * 2 1 3 10 10 C 1.46899 * 110.99825 * 3.85142 * 9 2 1 11 11 C 1.53009 * 109.47118 * 173.14768 * 10 9 2 12 12 C 1.52997 * 109.46841 * 185.90097 * 11 10 9 13 13 C 1.50701 * 109.46833 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99685 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46898 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47289 * 60.00139 * 17 15 13 20 20 H 1.48493 * 109.47103 * 299.99826 * 17 15 13 21 21 H 1.09007 * 109.47115 * 177.03937 * 1 2 3 22 22 H 1.08998 * 109.47112 * 297.03234 * 1 2 3 23 23 H 1.09003 * 109.47606 * 57.03537 * 1 2 3 24 24 H 1.09000 * 110.70365 * 23.31130 * 4 2 1 25 25 H 1.08996 * 110.70712 * 260.07246 * 4 2 1 26 26 H 1.08997 * 110.99412 * 206.25839 * 5 4 2 27 27 H 1.09002 * 110.99426 * 82.43519 * 5 4 2 28 28 H 1.09000 * 109.46726 * 304.62509 * 8 6 5 29 29 H 1.08994 * 109.47120 * 64.62403 * 8 6 5 30 30 H 1.09001 * 109.47267 * 184.62373 * 8 6 5 31 31 H 1.08995 * 109.47284 * 53.14471 * 10 9 2 32 32 H 1.09004 * 109.47163 * 293.14585 * 10 9 2 33 33 H 1.08999 * 109.46643 * 65.90516 * 11 10 9 34 34 H 1.08996 * 109.47031 * 305.89855 * 11 10 9 35 35 H 1.08996 * 109.47733 * 60.00274 * 12 11 10 36 36 H 1.09000 * 109.47590 * 299.99688 * 12 11 10 37 37 H 0.96998 * 119.99624 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6940 6 6 2.8188 -1.8832 -0.7349 7 1 2.1939 -2.7760 -0.7095 8 6 4.0236 -2.1008 -1.6526 9 7 2.0315 -0.7164 -1.1870 10 6 0.9239 -1.1339 -2.0570 11 6 1.4867 -1.7190 -3.3539 12 6 0.3379 -2.0177 -4.3193 13 6 0.8921 -2.5945 -5.5964 14 1 1.9571 -2.7345 -5.7082 15 6 0.0395 -2.9436 -6.6222 16 7 -1.2575 -2.7736 -6.4859 17 14 0.7266 -3.6580 -8.2056 18 1 -0.3884 -3.9480 -9.1425 19 1 1.4593 -4.9142 -7.9049 20 1 1.6550 -2.6802 -8.8278 21 1 -0.3634 -1.0264 -0.0531 22 1 -0.3633 0.4671 0.9154 23 1 -0.3634 0.5592 -0.8622 24 1 1.3056 -1.4473 1.6168 25 1 2.3514 -0.0465 2.0204 26 1 3.4882 -2.4084 1.2834 27 1 4.1658 -0.8664 0.6613 28 1 4.6587 -1.2152 -1.6345 29 1 4.5930 -2.9633 -1.3063 30 1 3.6774 -2.2790 -2.6707 31 1 0.2989 -0.2715 -2.2886 32 1 0.3261 -1.8893 -1.5469 33 1 2.0247 -2.6408 -3.1331 34 1 2.1678 -1.0011 -3.8108 35 1 -0.2002 -1.0959 -4.5401 36 1 -0.3433 -2.7355 -3.8624 37 1 -1.6142 -2.4030 -5.6636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610710584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = -20.220070 kcal Electronic energy + Delta-G solvation = -14541.212122 eV Core-core repulsion = 12317.448299 eV Total energy + Delta-G solvation = -2223.763823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.58687 -34.53964 -32.75549 -32.46179 -29.84137 -27.95288 -25.71565 -24.04636 -22.66086 -20.88581 -20.33297 -18.93900 -16.68470 -15.93961 -15.52136 -14.73526 -14.07363 -13.68502 -13.38568 -13.07151 -12.79727 -12.66231 -12.29269 -12.01178 -11.73719 -11.35839 -11.26720 -11.07451 -10.76250 -10.70718 -10.58840 -10.54280 -10.26731 -10.04950 -9.69885 -9.49689 -8.47323 -8.26799 -8.00296 -6.30592 -3.98656 3.47122 3.49506 3.68040 4.13126 4.59266 4.67048 4.73258 4.91421 5.26659 5.38586 5.39841 5.46746 5.52863 5.65440 5.70549 5.70900 5.83628 5.86056 5.89717 6.00785 6.04813 6.10683 6.28499 6.37392 6.38770 6.48260 6.70022 6.77370 7.07749 7.34641 7.43756 7.51134 7.64675 8.30055 8.53050 8.95107 9.73510 11.10109 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048043 B = 0.006599 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.666506 B = 4241.774714 C = 4700.393718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 H 0.081 0.919 4 C -0.138 4.138 5 C -0.126 4.126 6 C 0.070 3.930 7 H 0.052 0.948 8 C -0.144 4.144 9 N -0.522 5.522 10 C 0.049 3.951 11 C -0.101 4.101 12 C 0.009 3.991 13 C -0.598 4.598 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.915 5.915 17 Si 1.068 2.932 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.006 0.994 36 H 0.003 0.997 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.907 3.465 14.509 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.040 4.040 3 H 0.099 0.901 4 C -0.177 4.177 5 C -0.164 4.164 6 C -0.038 4.038 7 H 0.070 0.930 8 C -0.201 4.201 9 N -0.247 5.247 10 C -0.078 4.078 11 C -0.138 4.138 12 C -0.029 4.029 13 C -0.637 4.637 14 H 0.066 0.934 15 C -0.191 4.191 16 N -0.552 5.552 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.214 1.214 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.785 3.221 12.715 14.768 hybrid contribution -0.159 0.064 2.030 2.037 sum 6.626 3.285 14.745 16.496 Atomic orbital electron populations 1.22366 0.96069 1.02352 1.01962 1.22392 0.93754 0.98692 0.89193 0.90148 1.22871 0.97740 0.99309 0.97753 1.22759 0.97944 0.99964 0.95702 1.22537 0.95322 0.92546 0.93415 0.93029 1.21911 0.96687 1.00694 1.00815 1.63720 1.22608 1.22926 1.15426 1.22527 0.92150 0.98869 0.94266 1.21642 0.99676 0.99162 0.93358 1.19208 0.93671 0.95688 0.94332 1.22063 0.94964 1.45593 1.01045 0.93388 1.25854 0.94776 0.95777 1.02646 1.70780 1.12451 1.42547 1.29429 0.83556 0.75188 0.76211 0.75374 1.20807 1.21505 1.21438 0.92281 0.92644 0.91632 0.91623 0.91198 0.91311 0.90800 0.92460 0.93112 0.90892 0.90966 0.95332 0.93072 0.92454 0.97605 0.97877 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 7.84 37.15 0.29 -1.84 16 2 C 0.07 0.89 4.02 -66.73 -0.27 0.63 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -1.54 6.47 -24.91 -0.16 -1.70 16 5 C -0.13 -1.45 6.50 -24.59 -0.16 -1.61 16 6 C 0.07 1.01 2.56 -66.18 -0.17 0.84 16 7 H 0.05 0.81 7.68 -51.93 -0.40 0.41 16 8 C -0.14 -2.06 9.26 37.16 0.34 -1.71 16 9 N -0.52 -8.27 4.87 -215.53 -1.05 -9.32 16 10 C 0.05 0.90 3.67 -3.82 -0.01 0.88 16 11 C -0.10 -2.18 3.98 -26.73 -0.11 -2.29 16 12 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 13 C -0.60 -17.63 9.11 -34.44 -0.31 -17.94 16 14 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 15 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 16 N -0.92 -28.79 13.65 55.43 0.76 -28.04 16 17 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.06 0.79 6.66 -51.92 -0.35 0.45 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.88 6.65 -51.93 -0.35 0.53 16 24 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 28 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.21 5.34 -51.93 -0.28 0.94 16 31 H 0.07 1.32 6.36 -51.93 -0.33 0.99 16 32 H 0.03 0.52 6.64 -51.93 -0.34 0.18 16 33 H 0.05 1.10 6.03 -51.93 -0.31 0.79 16 34 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 36 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 37 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -31.01 282.09 -8.37 -39.37 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -6.47 Total: -2.75 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -0.77 Total: -24.36 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.29 Total: -37.36 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.01 -8.37 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.154 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds