Wall clock time and date at job start Sun Mar 29 2020 21:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.01293 * 2 1 4 4 C 1.54323 * 109.89088 * 121.11641 * 2 1 3 5 5 C 1.55137 * 103.01884 * 141.68975 * 4 2 1 6 6 C 1.54911 * 101.65332 * 324.34934 * 5 4 2 7 7 H 1.09004 * 110.37168 * 278.23611 * 6 5 4 8 8 C 1.53004 * 110.37395 * 155.90022 * 6 5 4 9 9 N 1.47440 * 109.89045 * 238.88748 * 2 1 3 10 10 C 1.46899 * 110.99825 * 3.85142 * 9 2 1 11 11 C 1.53009 * 109.47118 * 173.14768 * 10 9 2 12 12 C 1.52997 * 109.46841 * 185.90097 * 11 10 9 13 13 C 1.50701 * 109.46833 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00355 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99805 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99685 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46898 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47289 * 60.00139 * 17 15 13 20 20 H 1.48493 * 109.47103 * 299.99826 * 17 15 13 21 21 H 1.09007 * 109.47115 * 177.03937 * 1 2 3 22 22 H 1.08998 * 109.47112 * 297.03234 * 1 2 3 23 23 H 1.09003 * 109.47606 * 57.03537 * 1 2 3 24 24 H 1.09000 * 110.70365 * 23.31130 * 4 2 1 25 25 H 1.08996 * 110.70712 * 260.07246 * 4 2 1 26 26 H 1.08997 * 110.99412 * 206.25839 * 5 4 2 27 27 H 1.09002 * 110.99426 * 82.43519 * 5 4 2 28 28 H 1.09000 * 109.46726 * 304.62509 * 8 6 5 29 29 H 1.08994 * 109.47120 * 64.62403 * 8 6 5 30 30 H 1.09001 * 109.47267 * 184.62373 * 8 6 5 31 31 H 1.08995 * 109.47284 * 53.14471 * 10 9 2 32 32 H 1.09004 * 109.47163 * 293.14585 * 10 9 2 33 33 H 1.08999 * 109.46643 * 65.90516 * 11 10 9 34 34 H 1.08996 * 109.47031 * 305.89855 * 11 10 9 35 35 H 1.08996 * 109.47733 * 60.00274 * 12 11 10 36 36 H 1.09000 * 109.47590 * 299.99688 * 12 11 10 37 37 H 0.96998 * 119.99624 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7499 1.2424 5 6 3.2891 -1.5134 0.6940 6 6 2.8188 -1.8832 -0.7349 7 1 2.1939 -2.7760 -0.7095 8 6 4.0236 -2.1008 -1.6526 9 7 2.0315 -0.7164 -1.1870 10 6 0.9239 -1.1339 -2.0570 11 6 1.4867 -1.7190 -3.3539 12 6 0.3379 -2.0177 -4.3193 13 6 0.8921 -2.5945 -5.5964 14 1 1.9571 -2.7345 -5.7082 15 6 0.0395 -2.9436 -6.6222 16 7 -1.2575 -2.7736 -6.4859 17 14 0.7266 -3.6580 -8.2056 18 1 -0.3884 -3.9480 -9.1425 19 1 1.4593 -4.9142 -7.9049 20 1 1.6550 -2.6802 -8.8278 21 1 -0.3634 -1.0264 -0.0531 22 1 -0.3633 0.4671 0.9154 23 1 -0.3634 0.5592 -0.8622 24 1 1.3056 -1.4473 1.6168 25 1 2.3514 -0.0465 2.0204 26 1 3.4882 -2.4084 1.2834 27 1 4.1658 -0.8664 0.6613 28 1 4.6587 -1.2152 -1.6345 29 1 4.5930 -2.9633 -1.3063 30 1 3.6774 -2.2790 -2.6707 31 1 0.2989 -0.2715 -2.2886 32 1 0.3261 -1.8893 -1.5469 33 1 2.0247 -2.6408 -3.1331 34 1 2.1678 -1.0011 -3.8108 35 1 -0.2002 -1.0959 -4.5401 36 1 -0.3433 -2.7355 -3.8624 37 1 -1.6142 -2.4030 -5.6636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610710584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:02 Heat of formation + Delta-G solvation = -39.373067 kcal Electronic energy + Delta-G solvation = -14542.042658 eV Core-core repulsion = 12317.448299 eV Total energy + Delta-G solvation = -2224.594359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74550 -36.48824 -34.33004 -33.78315 -31.44712 -29.05882 -27.57083 -25.24960 -24.50522 -22.30262 -21.71577 -20.16927 -18.87387 -17.07452 -16.74732 -16.26535 -15.64826 -15.32452 -15.03362 -14.49168 -14.11537 -13.91080 -13.80120 -13.34292 -13.28561 -12.72857 -12.63681 -12.43088 -12.32791 -12.04437 -11.98126 -11.79377 -11.69663 -11.58565 -11.52238 -11.16782 -10.66831 -10.55536 -9.25076 -8.71041 -6.41043 1.51255 1.60364 1.79962 2.55891 2.94889 3.14131 3.64082 3.72395 3.94281 4.10405 4.18207 4.26869 4.39808 4.42767 4.51456 4.60210 4.68591 4.71458 4.78736 4.83633 4.85399 4.95116 4.98624 5.02011 5.12432 5.15841 5.27159 5.36014 5.41416 5.47129 5.54336 5.97489 6.14640 6.16352 6.19529 6.56573 7.41248 8.69764 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048043 B = 0.006599 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.666506 B = 4241.774714 C = 4700.393718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.062 3.938 3 H 0.087 0.913 4 C -0.131 4.131 5 C -0.117 4.117 6 C 0.061 3.939 7 H 0.037 0.963 8 C -0.140 4.140 9 N -0.533 5.533 10 C 0.064 3.936 11 C -0.083 4.083 12 C 0.010 3.990 13 C -0.619 4.619 14 H 0.049 0.951 15 C -0.041 4.041 16 N -0.938 5.938 17 Si 1.119 2.881 18 H -0.281 1.281 19 H -0.268 1.268 20 H -0.268 1.268 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.051 0.949 34 H 0.048 0.952 35 H -0.013 1.013 36 H -0.015 1.015 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 3.488 15.628 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.046 4.046 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.155 4.155 6 C -0.047 4.047 7 H 0.055 0.945 8 C -0.198 4.198 9 N -0.258 5.258 10 C -0.064 4.064 11 C -0.121 4.121 12 C -0.027 4.027 13 C -0.657 4.657 14 H 0.067 0.933 15 C -0.237 4.237 16 N -0.575 5.575 17 Si 0.939 3.061 18 H -0.207 1.207 19 H -0.193 1.193 20 H -0.194 1.194 21 H 0.065 0.935 22 H 0.098 0.902 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.005 0.995 36 H 0.004 0.996 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.273 3.259 13.871 16.476 hybrid contribution -0.620 0.087 1.724 1.834 sum 7.652 3.345 15.595 17.691 Atomic orbital electron populations 1.22316 0.95876 1.01563 1.02645 1.22538 0.94025 0.98940 0.89094 0.89460 1.22855 0.97422 0.99518 0.97149 1.22736 0.98302 1.00963 0.93481 1.22651 0.94907 0.91542 0.95573 0.94522 1.21868 0.96937 1.01809 0.99143 1.63670 1.21683 1.23578 1.16849 1.22213 0.92686 0.98284 0.93177 1.21400 0.97519 0.99152 0.94055 1.19153 0.94756 0.94052 0.94777 1.22495 0.95234 1.45646 1.02305 0.93262 1.27521 0.94382 0.95440 1.06401 1.70920 1.13601 1.44011 1.28984 0.82928 0.75091 0.76726 0.71322 1.20670 1.19307 1.19350 0.93522 0.90154 0.93023 0.91412 0.88728 0.89523 0.89935 0.91933 0.91140 0.93848 0.91466 0.95668 0.93055 0.93353 0.99489 0.99647 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 7.84 71.98 0.56 -3.43 16 2 C 0.06 1.50 4.02 45.26 0.18 1.69 16 3 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 4 C -0.13 -2.50 6.47 31.78 0.21 -2.29 16 5 C -0.12 -2.34 6.50 31.98 0.21 -2.13 16 6 C 0.06 1.69 2.56 45.39 0.12 1.81 16 7 H 0.04 1.12 7.68 -2.39 -0.02 1.10 16 8 C -0.14 -3.86 9.26 71.98 0.67 -3.19 16 9 N -0.53 -16.46 4.87 -835.79 -4.07 -20.53 16 10 C 0.06 2.38 3.67 86.31 0.32 2.70 16 11 C -0.08 -3.72 3.98 30.60 0.12 -3.60 16 12 C 0.01 0.56 4.28 29.85 0.13 0.69 16 13 C -0.62 -37.11 9.11 25.60 0.23 -36.88 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 15 C -0.04 -2.44 5.46 84.66 0.46 -1.97 16 16 N -0.94 -60.12 13.65 21.45 0.29 -59.83 16 17 Si 1.12 51.67 29.90 68.60 2.05 53.72 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H 0.05 1.22 6.66 -2.38 -0.02 1.21 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.37 6.65 -2.39 -0.02 1.35 16 24 H 0.07 1.28 7.85 -2.39 -0.02 1.26 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 28 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.44 5.34 -2.39 -0.01 1.42 16 31 H 0.07 2.53 6.36 -2.39 -0.02 2.52 16 32 H 0.03 0.94 6.64 -2.38 -0.02 0.93 16 33 H 0.05 2.27 6.03 -2.39 -0.01 2.25 16 34 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 35 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 36 H -0.01 -0.86 8.01 -2.39 -0.02 -0.88 16 37 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 Total: -1.00 -67.19 282.09 2.59 -64.60 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.11 Total: 8.64 kcal Atomic # 6 Polarization: -49.81 SS G_CDS: 3.20 Total: -46.60 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -3.77 Total: -80.36 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 2.05 Total: 53.72 kcal Total: -67.19 2.59 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610710584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.224 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds