Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99909 * 2 1 4 4 H 1.07994 * 120.00106 * 322.04001 * 3 2 1 5 5 C 1.38818 * 119.99564 * 142.03816 * 3 2 1 6 6 N 1.31611 * 119.99886 * 157.06073 * 5 3 2 7 7 Si 1.86804 * 119.99983 * 337.05711 * 5 3 2 8 8 H 1.48502 * 109.46834 * 95.68875 * 7 5 3 9 9 H 1.48504 * 109.47186 * 215.68568 * 7 5 3 10 10 H 1.48498 * 109.47464 * 335.68890 * 7 5 3 11 11 C 1.46503 * 119.99730 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46644 * 90.00336 * 11 2 1 13 13 C 1.50705 * 109.47166 * 179.97438 * 12 11 2 14 14 N 1.29029 * 124.91748 * 90.29726 * 13 12 11 15 15 C 1.31772 * 117.12365 * 180.22996 * 14 13 12 16 16 C 1.33643 * 114.50235 * 359.48829 * 15 14 13 17 17 S 1.70979 * 124.91419 * 270.00119 * 13 12 11 18 18 H 1.09004 * 109.47521 * 265.66867 * 1 2 3 19 19 H 1.09000 * 109.47331 * 25.66437 * 1 2 3 20 20 H 1.09002 * 109.47464 * 145.66998 * 1 2 3 21 21 H 0.97005 * 120.00076 * 179.97438 * 6 5 3 22 22 H 1.08999 * 109.47093 * 330.00387 * 11 2 1 23 23 H 1.08992 * 109.47082 * 209.99831 * 11 2 1 24 24 H 1.08998 * 109.47213 * 59.99658 * 12 11 2 25 25 H 1.09005 * 109.47132 * 299.99871 * 12 11 2 26 26 H 1.08004 * 122.75272 * 179.75542 * 15 14 13 27 27 H 1.08001 * 126.03835 * 180.26795 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5753 5 6 3.3175 1.3130 0.7396 6 7 4.2040 2.2308 0.4171 7 14 3.6308 0.1815 2.1925 8 1 4.4689 -0.9641 1.7560 9 1 4.3370 0.9324 3.2615 10 1 2.3357 -0.3234 2.7150 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2064 -3.0158 -1.4413 14 7 2.6599 -4.1847 -1.4463 15 6 3.4678 -5.2256 -1.4403 16 6 4.7683 -4.9179 -1.4406 17 16 4.9100 -3.1617 -1.4415 18 1 -0.3634 -0.0776 1.0247 19 1 -0.3634 0.9263 -0.4451 20 1 -0.3634 -0.8486 -0.5796 21 1 5.0200 2.3199 0.9341 22 1 1.6083 -2.0282 0.5147 23 1 3.1498 -1.1383 0.5143 24 1 3.0415 -0.9515 -1.9559 25 1 1.5000 -1.8415 -1.9556 26 1 3.1085 -6.2442 -1.4398 27 1 5.5877 -5.6215 -1.4404 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611074043.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = 67.379803 kcal Electronic energy + Delta-G solvation = -11973.369470 eV Core-core repulsion = 9859.065034 eV Total energy + Delta-G solvation = -2114.304436 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36696 -36.21595 -32.38728 -31.37329 -28.68327 -26.25013 -25.02232 -22.78767 -20.82764 -19.58190 -17.68177 -16.76132 -15.52765 -15.15853 -14.39612 -14.06137 -13.75882 -13.33251 -12.92042 -12.41787 -12.23332 -11.69683 -11.59857 -11.21989 -11.01886 -10.63153 -10.47272 -9.86558 -9.61139 -9.33724 -9.14831 -8.68253 -8.51467 -6.86675 -6.05415 -3.45948 0.96282 1.64766 2.06051 3.07203 3.28760 3.44511 3.51147 4.43289 4.49621 5.01452 5.29272 5.31934 5.58900 5.64214 5.80232 5.98064 6.22492 6.29571 6.35437 6.54373 6.63545 6.72141 6.82951 7.99306 8.00955 8.33538 8.92767 9.65520 10.06951 11.09807 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.011091 C = 0.009611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.216371 B = 2524.019820 C = 2912.564043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.608 5.608 3 C -0.274 4.274 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.894 5.894 7 Si 0.869 3.131 8 H -0.282 1.282 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.148 3.852 12 C -0.067 4.067 13 C 0.076 3.924 14 N -0.490 5.490 15 C 0.040 3.960 16 C -0.284 4.284 17 S 0.119 5.881 18 H 0.009 0.991 19 H 0.047 0.953 20 H 0.030 0.970 21 H 0.264 0.736 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.170 0.830 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -12.109 -3.132 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.331 5.331 3 C -0.402 4.402 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.535 5.535 7 Si 0.698 3.302 8 H -0.210 1.210 9 H -0.226 1.226 10 H -0.194 1.194 11 C 0.020 3.980 12 C -0.111 4.111 13 C -0.202 4.202 14 N -0.205 5.205 15 C -0.112 4.112 16 C -0.424 4.424 17 S 0.373 5.627 18 H 0.027 0.973 19 H 0.066 0.934 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.187 0.813 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.732 -11.309 -3.097 11.749 hybrid contribution 0.142 -1.624 0.879 1.852 sum 0.874 -12.933 -2.218 13.151 Atomic orbital electron populations 1.21122 0.84191 0.99281 0.97644 1.44067 1.01030 1.01806 1.86238 1.18834 1.06174 0.90744 1.24483 0.90120 1.25468 0.96798 0.96371 0.97559 1.69873 1.08409 1.35939 1.39271 0.87045 0.78241 0.80248 0.84618 1.21006 1.22579 1.19364 1.21177 0.96824 0.88012 0.91999 1.21154 0.99384 0.87665 1.02850 1.27542 0.94369 0.98168 1.00080 1.66351 1.38539 0.97726 1.17845 1.21762 0.88657 0.98865 1.01933 1.26995 1.01620 0.98488 1.15258 1.84328 1.09357 1.01538 1.67498 0.97327 0.93433 0.95159 0.92576 0.93647 0.92669 0.88826 0.89433 0.81296 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.47 10.70 59.85 0.64 3.11 15 2 N -0.61 -14.59 2.47 -181.12 -0.45 -15.04 15 3 C -0.27 -7.58 9.88 -15.06 -0.15 -7.73 15 4 H 0.08 2.38 8.06 -52.49 -0.42 1.96 15 5 C 0.04 1.12 5.29 -17.43 -0.09 1.03 15 6 N -0.89 -26.76 13.97 55.49 0.78 -25.99 15 7 Si 0.87 22.16 25.10 -169.99 -4.27 17.89 15 8 H -0.28 -6.96 6.68 56.52 0.38 -6.59 15 9 H -0.30 -7.65 7.11 56.52 0.40 -7.25 15 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 15 11 C 0.15 3.27 4.51 -4.04 -0.02 3.26 15 12 C -0.07 -1.30 6.12 -27.88 -0.17 -1.47 15 13 C 0.08 1.38 6.64 -13.45 -0.09 1.30 15 14 N -0.49 -8.61 10.54 -11.86 -0.13 -8.74 15 15 C 0.04 0.57 11.35 -19.19 -0.22 0.35 15 16 C -0.28 -3.81 11.37 29.12 0.33 -3.48 15 17 S 0.12 1.92 23.18 -107.50 -2.49 -0.57 15 18 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 15 19 H 0.05 0.92 8.00 -51.93 -0.42 0.51 15 20 H 0.03 0.53 8.10 -51.93 -0.42 0.11 15 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 22 H 0.05 0.96 8.07 -51.93 -0.42 0.54 15 23 H 0.06 1.33 3.37 -51.93 -0.18 1.15 15 24 H 0.09 1.90 8.14 -51.93 -0.42 1.48 15 25 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 26 H 0.17 1.86 8.06 -52.48 -0.42 1.44 15 27 H 0.17 1.71 8.06 -52.49 -0.42 1.29 15 LS Contribution 246.48 15.07 3.71 3.71 Total: -1.00 -30.34 246.48 -5.73 -36.07 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -3.13 Total: -3.70 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 0.23 Total: -3.64 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.20 Total: -49.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.27 Total: 17.89 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.49 Total: -0.57 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.34 -5.73 -36.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611074043.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.450 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds