Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 119.99909 * 2 1 4 4 H 1.07994 * 120.00106 * 322.04001 * 3 2 1 5 5 C 1.38818 * 119.99564 * 142.03816 * 3 2 1 6 6 N 1.31611 * 119.99886 * 157.06073 * 5 3 2 7 7 Si 1.86804 * 119.99983 * 337.05711 * 5 3 2 8 8 H 1.48502 * 109.46834 * 95.68875 * 7 5 3 9 9 H 1.48504 * 109.47186 * 215.68568 * 7 5 3 10 10 H 1.48498 * 109.47464 * 335.68890 * 7 5 3 11 11 C 1.46503 * 119.99730 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46644 * 90.00336 * 11 2 1 13 13 C 1.50705 * 109.47166 * 179.97438 * 12 11 2 14 14 N 1.29029 * 124.91748 * 90.29726 * 13 12 11 15 15 C 1.31772 * 117.12365 * 180.22996 * 14 13 12 16 16 C 1.33643 * 114.50235 * 359.48829 * 15 14 13 17 17 S 1.70979 * 124.91419 * 270.00119 * 13 12 11 18 18 H 1.09004 * 109.47521 * 265.66867 * 1 2 3 19 19 H 1.09000 * 109.47331 * 25.66437 * 1 2 3 20 20 H 1.09002 * 109.47464 * 145.66998 * 1 2 3 21 21 H 0.97005 * 120.00076 * 179.97438 * 6 5 3 22 22 H 1.08999 * 109.47093 * 330.00387 * 11 2 1 23 23 H 1.08992 * 109.47082 * 209.99831 * 11 2 1 24 24 H 1.08998 * 109.47213 * 59.99658 * 12 11 2 25 25 H 1.09005 * 109.47132 * 299.99871 * 12 11 2 26 26 H 1.08004 * 122.75272 * 179.75542 * 15 14 13 27 27 H 1.08001 * 126.03835 * 180.26795 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5753 5 6 3.3175 1.3130 0.7396 6 7 4.2040 2.2308 0.4171 7 14 3.6308 0.1815 2.1925 8 1 4.4689 -0.9641 1.7560 9 1 4.3370 0.9324 3.2615 10 1 2.3357 -0.3234 2.7150 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7110 -1.4418 13 6 3.2064 -3.0158 -1.4413 14 7 2.6599 -4.1847 -1.4463 15 6 3.4678 -5.2256 -1.4403 16 6 4.7683 -4.9179 -1.4406 17 16 4.9100 -3.1617 -1.4415 18 1 -0.3634 -0.0776 1.0247 19 1 -0.3634 0.9263 -0.4451 20 1 -0.3634 -0.8486 -0.5796 21 1 5.0200 2.3199 0.9341 22 1 1.6083 -2.0282 0.5147 23 1 3.1498 -1.1383 0.5143 24 1 3.0415 -0.9515 -1.9559 25 1 1.5000 -1.8415 -1.9556 26 1 3.1085 -6.2442 -1.4398 27 1 5.5877 -5.6215 -1.4404 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611074043.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = 47.280161 kcal Electronic energy + Delta-G solvation = -11974.241056 eV Core-core repulsion = 9859.065034 eV Total energy + Delta-G solvation = -2115.176022 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60808 -38.02538 -34.19122 -33.17481 -30.02713 -28.08509 -26.59127 -24.27787 -22.69445 -20.81961 -18.95533 -18.78825 -17.34581 -16.50064 -15.99686 -15.57551 -15.20548 -15.11054 -14.60384 -14.16984 -13.76284 -13.43743 -13.26975 -12.77600 -12.53850 -12.36568 -12.28530 -11.85268 -11.52207 -10.67985 -10.63633 -10.38656 -9.87164 -8.80981 -8.23518 -5.61471 -0.25617 0.42459 0.86521 1.26741 1.37746 1.48333 1.87925 2.38347 2.94038 3.20382 3.51676 4.08670 4.24254 4.36102 4.39781 4.56364 4.58418 4.74869 4.89680 4.96325 5.11499 5.16243 5.30993 5.91236 6.15290 6.77450 6.93526 7.57676 8.01646 8.95800 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.011091 C = 0.009611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.216371 B = 2524.019820 C = 2912.564043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.623 5.623 3 C -0.265 4.265 4 H 0.049 0.951 5 C -0.009 4.009 6 N -0.938 5.938 7 Si 0.926 3.074 8 H -0.271 1.271 9 H -0.302 1.302 10 H -0.266 1.266 11 C 0.148 3.852 12 C -0.053 4.053 13 C 0.046 3.954 14 N -0.499 5.499 15 C 0.023 3.977 16 C -0.252 4.252 17 S 0.099 5.901 18 H 0.015 0.985 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.265 0.735 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.206 0.794 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -14.988 -2.893 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.347 5.347 3 C -0.395 4.395 4 H 0.067 0.933 5 C -0.207 4.207 6 N -0.582 5.582 7 Si 0.754 3.246 8 H -0.198 1.198 9 H -0.230 1.230 10 H -0.190 1.190 11 C 0.021 3.979 12 C -0.096 4.096 13 C -0.231 4.231 14 N -0.215 5.215 15 C -0.127 4.127 16 C -0.391 4.391 17 S 0.352 5.648 18 H 0.034 0.966 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.223 0.777 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.687 -14.228 -2.863 14.529 hybrid contribution 0.131 -0.838 0.708 1.105 sum 0.818 -15.066 -2.156 15.241 Atomic orbital electron populations 1.21238 0.81940 1.00616 0.98555 1.44207 1.02548 1.01242 1.86744 1.18726 1.06078 0.91436 1.23210 0.93322 1.25973 0.96890 0.98118 0.99673 1.69974 1.09208 1.38388 1.40602 0.86117 0.78238 0.78843 0.81368 1.19783 1.22992 1.19012 1.21124 0.95792 0.87350 0.93626 1.20763 0.99761 0.88334 1.00757 1.27160 0.95177 0.97836 1.02937 1.66334 1.39830 0.98158 1.17157 1.22324 0.88796 0.99548 1.02072 1.27455 1.02547 0.96890 1.12161 1.84419 1.08310 1.04574 1.67457 0.96624 0.93410 0.92334 0.92590 0.92327 0.94661 0.90752 0.88729 0.77740 0.77141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.68 10.70 127.77 1.37 6.05 15 2 N -0.62 -29.58 2.47 -726.94 -1.79 -31.37 15 3 C -0.26 -14.91 9.88 84.03 0.83 -14.08 15 4 H 0.05 3.00 8.06 -2.91 -0.02 2.98 15 5 C -0.01 -0.51 5.29 84.86 0.45 -0.06 15 6 N -0.94 -57.58 13.97 21.65 0.30 -57.28 15 7 Si 0.93 46.00 25.10 68.60 1.72 47.72 15 8 H -0.27 -12.81 6.68 99.48 0.66 -12.15 15 9 H -0.30 -15.02 7.11 99.48 0.71 -14.31 15 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 15 11 C 0.15 6.40 4.51 86.38 0.39 6.79 15 12 C -0.05 -2.03 6.12 29.85 0.18 -1.84 15 13 C 0.05 1.61 6.64 88.52 0.59 2.20 15 14 N -0.50 -16.24 10.54 -191.44 -2.02 -18.26 15 15 C 0.02 0.56 11.35 83.66 0.95 1.51 15 16 C -0.25 -5.72 11.37 66.78 0.76 -4.96 15 17 S 0.10 3.03 23.18 -56.49 -1.31 1.72 15 18 H 0.02 0.59 8.14 -2.39 -0.02 0.57 15 19 H 0.05 1.82 8.00 -2.39 -0.02 1.80 15 20 H 0.06 1.93 8.10 -2.39 -0.02 1.91 15 21 H 0.26 15.39 8.31 -92.70 -0.77 14.62 15 22 H 0.06 2.35 8.07 -2.39 -0.02 2.33 15 23 H 0.04 1.67 3.37 -2.39 -0.01 1.66 15 24 H 0.07 3.08 8.14 -2.39 -0.02 3.06 15 25 H 0.09 3.39 8.14 -2.38 -0.02 3.38 15 26 H 0.21 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.21 3.02 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -65.30 246.48 3.53 -61.77 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 1.11 Total: 0.10 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.52 Total: -4.40 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.51 Total: -106.92 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.72 Total: 47.72 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.31 Total: 1.72 kcal Total: -65.30 3.53 -61.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611074043.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.049 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds