Wall clock time and date at job start Sun Mar 29 2020 21:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 H 1.09001 * 109.47219 * 175.06545 * 3 2 1 5 5 C 1.50696 * 109.47176 * 55.06652 * 3 2 1 6 6 H 1.08005 * 119.99811 * 245.70282 * 5 3 2 7 7 C 1.37872 * 120.00167 * 65.70371 * 5 3 2 8 8 N 1.31514 * 119.99953 * 5.23066 * 7 5 3 9 9 Si 1.86799 * 120.00064 * 185.50105 * 7 5 3 10 10 H 1.48503 * 109.47247 * 179.72589 * 9 7 5 11 11 H 1.48503 * 109.47472 * 299.72442 * 9 7 5 12 12 H 1.48499 * 109.47235 * 59.72715 * 9 7 5 13 13 N 1.46908 * 109.47052 * 295.06397 * 3 2 1 14 14 C 1.46895 * 111.00162 * 279.83167 * 13 3 2 15 15 C 1.52995 * 109.46984 * 185.01930 * 14 13 3 16 16 C 1.53778 * 113.61504 * 274.13607 * 15 14 13 17 17 C 1.53959 * 87.01944 * 220.05089 * 16 15 14 18 18 C 1.53005 * 113.53554 * 270.81241 * 17 16 15 19 19 C 1.53779 * 87.11178 * 25.36403 * 17 16 15 20 20 H 1.08997 * 109.47164 * 305.00426 * 1 2 3 21 21 H 1.09002 * 109.47090 * 65.01129 * 1 2 3 22 22 H 1.09006 * 109.46962 * 185.01251 * 1 2 3 23 23 H 1.08994 * 109.47467 * 239.99897 * 2 1 3 24 24 H 1.09004 * 109.47236 * 119.99595 * 2 1 3 25 25 H 0.97001 * 120.00114 * 355.42621 * 8 7 5 26 26 H 1.00903 * 110.99402 * 43.78487 * 13 3 2 27 27 H 1.09001 * 109.47355 * 305.02420 * 14 13 3 28 28 H 1.09004 * 109.47084 * 65.01789 * 14 13 3 29 29 H 1.08995 * 112.85024 * 45.34007 * 15 14 13 30 30 H 1.08995 * 113.61948 * 334.56836 * 16 15 14 31 31 H 1.09002 * 113.61278 * 105.47584 * 16 15 14 32 32 H 1.08993 * 113.74560 * 139.94914 * 17 16 15 33 33 H 1.09007 * 109.46986 * 157.49518 * 18 17 16 34 34 H 1.08999 * 109.47331 * 277.49362 * 18 17 16 35 35 H 1.08995 * 109.47102 * 37.49780 * 18 17 16 36 36 H 1.09001 * 113.61410 * 220.09163 * 19 17 16 37 37 H 1.08993 * 113.61360 * 89.18722 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7567 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6737 0.8997 2.6696 9 14 0.9064 2.6438 3.8983 10 1 1.4255 2.0772 5.1690 11 1 1.1671 4.1054 3.8651 12 1 -0.5557 2.3997 3.8083 13 7 1.6500 2.0998 -1.2546 14 6 2.5594 1.7302 -2.3474 15 6 2.1991 2.5275 -3.6025 16 6 1.0933 1.8761 -4.4497 17 6 1.9035 2.3005 -5.6881 18 6 1.5469 3.6967 -6.2025 19 6 3.1485 2.2758 -4.7858 20 1 -0.3633 0.5895 0.8417 21 1 -0.3633 0.4341 -0.9315 22 1 -0.3633 -1.0238 0.0898 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.0685 0.4250 1.9214 26 1 0.6930 1.8858 -1.4926 27 1 3.5860 1.9538 -2.0571 28 1 2.4645 0.6642 -2.5543 29 1 2.0271 3.5841 -3.3978 30 1 1.0246 0.7958 -4.3221 31 1 0.1280 2.3754 -4.3662 32 1 1.9222 1.5503 -6.4786 33 1 2.3788 4.0927 -6.7851 34 1 0.6590 3.6363 -6.8317 35 1 1.3491 4.3557 -5.3572 36 1 3.8399 3.0974 -4.9732 37 1 3.6427 1.3050 -4.7502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691938985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:54 Heat of formation + Delta-G solvation = -4.818513 kcal Electronic energy + Delta-G solvation = -14470.587122 eV Core-core repulsion = 12247.491161 eV Total energy + Delta-G solvation = -2223.095961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26663 -36.50896 -32.73973 -30.85395 -29.16824 -26.38724 -25.56054 -24.32169 -23.48605 -21.34960 -19.43629 -18.41694 -16.79867 -15.61759 -14.89621 -14.27968 -14.02171 -13.67123 -13.49925 -13.20893 -12.61641 -12.42970 -12.34974 -11.89694 -11.76606 -11.57293 -11.09963 -10.75875 -10.73287 -10.38929 -10.27973 -10.08665 -10.04395 -9.93698 -9.83903 -9.60223 -8.56336 -8.19158 -7.23563 -6.25211 -3.94598 3.48389 3.49828 3.68558 4.56364 4.63914 4.70269 4.88759 4.95855 5.36907 5.43474 5.45438 5.73704 5.73940 5.78821 5.85337 5.89452 5.97295 6.07937 6.12976 6.14414 6.19030 6.28666 6.35385 6.40947 6.53659 6.72049 6.74421 7.04239 7.12397 7.28351 7.35078 8.00019 8.34121 8.55597 8.69846 8.98563 9.74183 11.10915 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049276 B = 0.006592 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.091377 B = 4246.288887 C = 4358.366122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.569 4.569 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.676 5.676 14 C 0.067 3.933 15 C -0.101 4.101 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.134 4.134 19 C -0.134 4.134 20 H 0.072 0.928 21 H 0.032 0.968 22 H 0.026 0.974 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.268 0.732 26 H 0.327 0.673 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 1.302 -13.580 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.192 4.192 3 C 0.094 3.906 4 H 0.043 0.957 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.306 5.306 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.172 4.172 17 C -0.135 4.135 18 C -0.191 4.191 19 C -0.172 4.172 20 H 0.091 0.909 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.906 1.972 -11.762 12.077 hybrid contribution -0.197 -1.152 -1.883 2.217 sum -2.103 0.820 -13.645 13.830 Atomic orbital electron populations 1.21587 0.96817 0.99019 1.01382 1.22256 0.96144 1.01566 0.99284 1.19341 0.95502 0.88320 0.87428 0.95739 1.21827 1.29881 1.17984 0.91135 0.92774 1.25714 0.95850 0.97122 1.00024 1.70807 1.24865 1.24394 1.35536 0.83563 0.75512 0.75568 0.75741 1.21018 1.21556 1.21573 1.60736 1.05013 1.62228 1.02628 1.21893 0.97811 0.95348 0.91238 1.22555 0.95734 1.00698 0.93015 1.23079 0.97952 1.00388 0.95811 1.22309 0.97365 0.97436 0.96368 1.21587 1.00881 0.95660 1.00953 1.23005 0.96140 1.01631 0.96394 0.90887 0.94885 0.95444 0.96157 0.91610 0.91981 0.85507 0.92038 0.96587 0.88716 0.90661 0.91651 0.91278 0.92691 0.92779 0.92205 0.91735 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.15 -3.55 5.45 -26.73 -0.15 -3.69 16 3 C 0.20 5.08 1.95 -68.86 -0.13 4.95 16 4 H 0.02 0.68 7.32 -51.93 -0.38 0.30 16 5 C -0.57 -15.82 7.18 -34.44 -0.25 -16.07 16 6 H 0.05 1.54 7.82 -52.48 -0.41 1.13 16 7 C 0.02 0.46 5.29 -17.82 -0.09 0.36 16 8 N -0.92 -27.47 13.20 55.43 0.73 -26.74 16 9 Si 1.07 25.33 29.91 -169.99 -5.08 20.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.68 -14.61 6.19 -107.95 -0.67 -15.28 16 14 C 0.07 1.23 5.30 -3.83 -0.02 1.21 16 15 C -0.10 -1.51 3.58 -89.81 -0.32 -1.83 16 16 C -0.13 -1.77 7.20 -25.83 -0.19 -1.96 16 17 C -0.12 -1.33 4.55 -89.71 -0.41 -1.74 16 18 C -0.13 -1.37 9.59 37.16 0.36 -1.01 16 19 C -0.13 -1.68 7.23 -25.92 -0.19 -1.86 16 20 H 0.07 1.70 6.88 -51.93 -0.36 1.35 16 21 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 24 H 0.07 1.68 6.16 -51.93 -0.32 1.36 16 25 H 0.27 7.99 5.61 -40.82 -0.23 7.76 16 26 H 0.33 6.79 6.79 -39.29 -0.27 6.52 16 27 H 0.06 1.19 7.95 -51.93 -0.41 0.77 16 28 H 0.02 0.29 6.93 -51.93 -0.36 -0.07 16 29 H 0.09 1.49 7.66 -51.93 -0.40 1.10 16 30 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 31 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 36 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -28.88 286.40 -8.14 -37.02 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.39 Total: 4.50 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.04 Total: -24.06 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.06 Total: -42.02 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.88 -8.14 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691938985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.198 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds