Wall clock time and date at job start Sun Mar 29 2020 21:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 H 1.09001 * 109.47219 * 175.06545 * 3 2 1 5 5 C 1.50696 * 109.47176 * 55.06652 * 3 2 1 6 6 H 1.08005 * 119.99811 * 245.70282 * 5 3 2 7 7 C 1.37872 * 120.00167 * 65.70371 * 5 3 2 8 8 N 1.31514 * 119.99953 * 5.23066 * 7 5 3 9 9 Si 1.86799 * 120.00064 * 185.50105 * 7 5 3 10 10 H 1.48503 * 109.47247 * 179.72589 * 9 7 5 11 11 H 1.48503 * 109.47472 * 299.72442 * 9 7 5 12 12 H 1.48499 * 109.47235 * 59.72715 * 9 7 5 13 13 N 1.46908 * 109.47052 * 295.06397 * 3 2 1 14 14 C 1.46895 * 111.00162 * 279.83167 * 13 3 2 15 15 C 1.52995 * 109.46984 * 185.01930 * 14 13 3 16 16 C 1.53778 * 113.61504 * 274.13607 * 15 14 13 17 17 C 1.53959 * 87.01944 * 220.05089 * 16 15 14 18 18 C 1.53005 * 113.53554 * 270.81241 * 17 16 15 19 19 C 1.53779 * 87.11178 * 25.36403 * 17 16 15 20 20 H 1.08997 * 109.47164 * 305.00426 * 1 2 3 21 21 H 1.09002 * 109.47090 * 65.01129 * 1 2 3 22 22 H 1.09006 * 109.46962 * 185.01251 * 1 2 3 23 23 H 1.08994 * 109.47467 * 239.99897 * 2 1 3 24 24 H 1.09004 * 109.47236 * 119.99595 * 2 1 3 25 25 H 0.97001 * 120.00114 * 355.42621 * 8 7 5 26 26 H 1.00903 * 110.99402 * 43.78487 * 13 3 2 27 27 H 1.09001 * 109.47355 * 305.02420 * 14 13 3 28 28 H 1.09004 * 109.47084 * 65.01789 * 14 13 3 29 29 H 1.08995 * 112.85024 * 45.34007 * 15 14 13 30 30 H 1.08995 * 113.61948 * 334.56836 * 16 15 14 31 31 H 1.09002 * 113.61278 * 105.47584 * 16 15 14 32 32 H 1.08993 * 113.74560 * 139.94914 * 17 16 15 33 33 H 1.09007 * 109.46986 * 157.49518 * 18 17 16 34 34 H 1.08999 * 109.47331 * 277.49362 * 18 17 16 35 35 H 1.08995 * 109.47102 * 37.49780 * 18 17 16 36 36 H 1.09001 * 113.61410 * 220.09163 * 19 17 16 37 37 H 1.08993 * 113.61360 * 89.18722 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7567 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6737 0.8997 2.6696 9 14 0.9064 2.6438 3.8983 10 1 1.4255 2.0772 5.1690 11 1 1.1671 4.1054 3.8651 12 1 -0.5557 2.3997 3.8083 13 7 1.6500 2.0998 -1.2546 14 6 2.5594 1.7302 -2.3474 15 6 2.1991 2.5275 -3.6025 16 6 1.0933 1.8761 -4.4497 17 6 1.9035 2.3005 -5.6881 18 6 1.5469 3.6967 -6.2025 19 6 3.1485 2.2758 -4.7858 20 1 -0.3633 0.5895 0.8417 21 1 -0.3633 0.4341 -0.9315 22 1 -0.3633 -1.0238 0.0898 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 3.0685 0.4250 1.9214 26 1 0.6930 1.8858 -1.4926 27 1 3.5860 1.9538 -2.0571 28 1 2.4645 0.6642 -2.5543 29 1 2.0271 3.5841 -3.3978 30 1 1.0246 0.7958 -4.3221 31 1 0.1280 2.3754 -4.3662 32 1 1.9222 1.5503 -6.4786 33 1 2.3788 4.0927 -6.7851 34 1 0.6590 3.6363 -6.8317 35 1 1.3491 4.3557 -5.3572 36 1 3.8399 3.0974 -4.9732 37 1 3.6427 1.3050 -4.7502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691938985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:54 Heat of formation + Delta-G solvation = -21.647843 kcal Electronic energy + Delta-G solvation = -14471.316896 eV Core-core repulsion = 12247.491161 eV Total energy + Delta-G solvation = -2223.825736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.39562 -38.33393 -34.62870 -32.63193 -30.39658 -28.07713 -26.60815 -26.03495 -25.31985 -22.63576 -21.37479 -19.46453 -18.81140 -17.11006 -16.15799 -15.74897 -15.66348 -15.46583 -15.09460 -14.52483 -14.27796 -13.81398 -13.79406 -13.19303 -13.05619 -12.94005 -12.77490 -12.59189 -12.12663 -12.00504 -11.92999 -11.76669 -11.69160 -11.40670 -11.04792 -10.86727 -10.57576 -10.33296 -9.02128 -8.50691 -6.21133 1.55815 1.63140 1.82198 2.60926 3.26080 3.45785 3.67646 3.78889 3.87030 4.00074 4.28192 4.32550 4.44779 4.51275 4.56850 4.66098 4.75756 4.83541 4.86757 4.88510 4.96363 5.00665 5.06504 5.13182 5.18046 5.20322 5.32665 5.38528 5.49701 5.54107 5.65748 5.99095 6.22117 6.55130 6.80316 6.81225 7.55872 8.85596 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.049276 B = 0.006592 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.091377 B = 4246.288887 C = 4358.366122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 C 0.205 3.795 4 H -0.012 1.012 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.031 4.031 8 N -0.943 5.943 9 Si 1.111 2.889 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.270 1.270 13 N -0.681 5.681 14 C 0.071 3.929 15 C -0.105 4.105 16 C -0.133 4.133 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.130 4.130 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.257 0.743 26 H 0.334 0.666 27 H 0.043 0.957 28 H 0.019 0.981 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 1.553 -15.076 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.184 4.184 3 C 0.096 3.904 4 H 0.006 0.994 5 C -0.614 4.614 6 H 0.064 0.936 7 C -0.228 4.228 8 N -0.582 5.582 9 Si 0.934 3.066 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.195 1.195 13 N -0.312 5.312 14 C -0.059 4.059 15 C -0.124 4.124 16 C -0.171 4.171 17 C -0.123 4.123 18 C -0.191 4.191 19 C -0.168 4.168 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.153 0.847 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.070 2.227 -13.295 13.825 hybrid contribution 0.204 -1.225 -1.473 1.927 sum -2.866 1.003 -14.768 15.077 Atomic orbital electron populations 1.21490 0.94865 1.00250 1.01411 1.22104 0.97768 0.99897 0.98664 1.19131 0.93103 0.89606 0.88547 0.99432 1.22083 1.29345 1.17705 0.92299 0.93634 1.27036 0.95723 0.97048 1.03005 1.70917 1.26388 1.25745 1.35121 0.82997 0.75603 0.75296 0.72704 1.21339 1.20237 1.19485 1.60626 1.05936 1.62140 1.02461 1.21927 0.96195 0.96160 0.91595 1.22517 0.98130 0.99656 0.92083 1.23077 0.97602 1.00175 0.96210 1.22278 0.95559 0.98519 0.95936 1.21603 1.01946 0.94647 1.00880 1.23010 0.96532 1.02045 0.95171 0.93268 0.92800 0.93158 0.94493 0.94412 0.93185 0.84749 0.93859 0.96261 0.89706 0.90713 0.91447 0.89728 0.91566 0.91534 0.93243 0.91036 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.38 71.98 0.68 -4.37 16 2 C -0.14 -6.72 5.45 30.59 0.17 -6.56 16 3 C 0.21 10.50 1.95 44.17 0.09 10.59 16 4 H -0.01 -0.71 7.32 -2.39 -0.02 -0.73 16 5 C -0.58 -32.37 7.18 25.60 0.18 -32.18 16 6 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 7 C -0.03 -1.75 5.29 84.65 0.45 -1.30 16 8 N -0.94 -57.64 13.20 21.45 0.28 -57.35 16 9 Si 1.11 50.88 29.91 68.60 2.05 52.93 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.68 -29.44 6.19 -495.45 -3.07 -32.50 16 14 C 0.07 2.58 5.30 86.30 0.46 3.04 16 15 C -0.11 -3.01 3.58 -10.27 -0.04 -3.04 16 16 C -0.13 -3.21 7.20 31.18 0.22 -2.99 16 17 C -0.10 -2.09 4.55 -10.21 -0.05 -2.14 16 18 C -0.13 -2.36 9.59 71.98 0.69 -1.67 16 19 C -0.13 -2.99 7.23 31.12 0.23 -2.77 16 20 H 0.05 2.25 6.88 -2.39 -0.02 2.23 16 21 H 0.05 1.96 6.68 -2.39 -0.02 1.94 16 22 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.04 1.56 7.13 -2.39 -0.02 1.54 16 24 H 0.04 1.96 6.16 -2.38 -0.01 1.94 16 25 H 0.26 15.89 5.61 -92.71 -0.52 15.37 16 26 H 0.33 13.54 6.79 -89.69 -0.61 12.93 16 27 H 0.04 1.71 7.95 -2.39 -0.02 1.69 16 28 H 0.02 0.69 6.93 -2.38 -0.02 0.67 16 29 H 0.08 2.61 7.66 -2.39 -0.02 2.59 16 30 H 0.07 1.82 7.92 -2.39 -0.02 1.80 16 31 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.98 7.34 -2.39 -0.02 0.96 16 36 H 0.07 1.55 8.10 -2.39 -0.02 1.54 16 37 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -62.22 286.40 3.00 -59.22 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.66 Total: 21.11 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.07 Total: -43.40 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -2.78 Total: -89.86 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Total: -62.22 3.00 -59.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691938985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.571 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds