Wall clock time and date at job start Sun Mar 29 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47314 * 59.99935 * 9 7 5 11 11 H 1.48506 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46996 * 299.99577 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 H 1.08998 * 112.84807 * 26.68553 * 14 13 2 16 16 C 1.53780 * 113.61412 * 255.49501 * 14 13 2 17 17 C 1.53784 * 87.07912 * 270.88196 * 16 14 13 18 18 C 1.53778 * 113.61774 * 157.99260 * 14 13 2 19 19 C 1.52999 * 113.61805 * 203.66369 * 18 14 13 20 20 C 1.53004 * 113.61397 * 334.57053 * 18 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.00902 * 111.00328 * 151.04219 * 13 2 1 28 28 H 1.08998 * 113.61746 * 25.42514 * 16 14 13 29 29 H 1.09002 * 113.61644 * 156.25142 * 16 14 13 30 30 H 1.08992 * 113.61739 * 89.11608 * 17 16 14 31 31 H 1.09001 * 113.61426 * 219.93859 * 17 16 14 32 32 H 1.09004 * 109.46481 * 59.99939 * 19 18 14 33 33 H 1.08996 * 109.47228 * 180.02562 * 19 18 14 34 34 H 1.08997 * 109.47172 * 300.00513 * 19 18 14 35 35 H 1.09002 * 109.46926 * 59.99906 * 20 18 14 36 36 H 1.08998 * 109.47056 * 179.97438 * 20 18 14 37 37 H 1.08999 * 109.47054 * 299.99792 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.6846 -1.6860 -1.2273 11 1 6.5870 -1.7610 -3.6495 12 1 6.4843 0.3700 -2.4974 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 1 1.3712 1.0449 2.2718 16 6 3.5103 0.6731 2.6980 17 6 3.5913 -0.5620 3.6105 18 6 2.0581 -0.4933 3.7076 19 6 1.5554 0.3864 4.8541 20 6 1.3794 -1.8640 3.6670 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 4.0608 -2.2443 -4.0351 27 1 2.9173 -1.1205 1.0286 28 1 4.1991 0.6383 1.8540 29 1 3.5492 1.6195 3.2374 30 1 3.9572 -1.4554 3.1046 31 1 4.0989 -0.3735 4.5565 32 1 0.5380 0.7147 4.6408 33 1 1.5662 -0.1850 5.7822 34 1 2.2041 1.2564 4.9558 35 1 1.9095 -2.5113 2.9684 36 1 1.4001 -2.3093 4.6617 37 1 0.3455 -1.7480 3.3419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:50 Heat of formation + Delta-G solvation = -5.499018 kcal Electronic energy + Delta-G solvation = -14760.659944 eV Core-core repulsion = 12537.534474 eV Total energy + Delta-G solvation = -2223.125470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63901 -35.51955 -32.48082 -30.51540 -28.83792 -27.37559 -27.00900 -24.10025 -22.85436 -21.93155 -19.38357 -17.58229 -16.32576 -15.51418 -14.79916 -14.40520 -14.12222 -13.65617 -13.49449 -12.82260 -12.78910 -12.06282 -11.95115 -11.77342 -11.58955 -11.23152 -11.15273 -11.06881 -11.02884 -10.69557 -10.58819 -10.25783 -10.22997 -9.70349 -9.60068 -9.14617 -9.04625 -8.38619 -7.53760 -6.01846 -4.04886 3.30896 3.36006 3.37817 4.43517 4.65662 4.85983 5.04084 5.18907 5.32699 5.46069 5.54684 5.75213 5.85157 5.93959 6.00762 6.05875 6.06956 6.11765 6.20664 6.25503 6.31557 6.38412 6.41603 6.56261 6.65541 6.76786 6.86714 6.96886 6.99178 7.59181 7.66170 7.98375 8.12802 8.33559 8.40264 9.01268 9.59158 11.09042 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.008926 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.754093 B = 3136.025246 C = 3627.031815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.089 3.911 3 H 0.029 0.971 4 C 0.021 3.979 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.660 5.660 14 C 0.082 3.918 15 H 0.071 0.929 16 C -0.176 4.176 17 C -0.129 4.129 18 C -0.086 4.086 19 C -0.124 4.124 20 C -0.115 4.115 21 H 0.036 0.964 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.356 0.644 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 3.245 12.723 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.293 5.293 14 C -0.029 4.029 15 H 0.089 0.911 16 C -0.215 4.215 17 C -0.167 4.167 18 C -0.087 4.087 19 C -0.181 4.181 20 C -0.173 4.173 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.178 0.822 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.409 2.877 12.681 13.443 hybrid contribution 1.921 0.652 -0.376 2.063 sum -1.489 3.529 12.306 12.888 Atomic orbital electron populations 1.21798 0.96814 1.01251 0.99361 1.21605 0.93227 0.95926 0.91306 0.95322 1.19273 0.95361 0.96174 0.90868 1.21146 0.92247 1.34440 1.08319 0.93056 1.24980 0.98143 0.95218 0.95720 1.69949 1.35560 1.35583 1.11929 0.86719 0.86031 0.78151 0.77467 1.20205 1.21271 1.20391 1.60382 1.34405 1.30728 1.03744 1.22667 0.94893 0.93925 0.91454 0.91078 1.23611 0.99850 0.97780 1.00299 1.22974 0.95889 0.98662 0.99167 1.21968 0.95151 0.96445 0.95163 1.21540 1.00702 0.98864 0.97014 1.21447 1.00746 0.95383 0.99710 0.94535 0.92713 0.93465 0.95639 0.96120 0.92910 0.82233 0.91167 0.90833 0.90019 0.92423 0.92664 0.92808 0.92924 0.91729 0.94523 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.40 37.16 0.35 -2.10 16 2 C 0.09 1.85 2.46 -67.71 -0.17 1.68 16 3 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.34 8.12 -34.44 -0.28 -14.62 16 6 H 0.05 1.37 7.49 -52.48 -0.39 0.97 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.66 -12.60 5.26 -98.90 -0.52 -13.12 16 14 C 0.08 1.33 3.41 -66.90 -0.23 1.11 16 15 H 0.07 1.16 7.43 -51.93 -0.39 0.77 16 16 C -0.18 -2.70 7.26 -25.92 -0.19 -2.89 16 17 C -0.13 -1.84 6.94 -25.91 -0.18 -2.02 16 18 C -0.09 -1.20 1.37 -153.69 -0.21 -1.41 16 19 C -0.12 -1.44 9.07 37.16 0.34 -1.11 16 20 C -0.12 -1.64 8.61 37.16 0.32 -1.32 16 21 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.36 7.45 6.55 -39.29 -0.26 7.20 16 28 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 30 H 0.08 1.24 7.83 -51.93 -0.41 0.83 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.58 7.34 -51.93 -0.38 0.20 16 35 H 0.06 1.01 7.57 -51.93 -0.39 0.61 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -28.08 293.14 -7.64 -35.72 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.78 Total: 3.00 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.47 Total: -20.65 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.22 Total: -38.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.08 -7.64 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.218 kcal (2) G-P(sol) polarization free energy of solvation -28.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds