Wall clock time and date at job start Sun Mar 29 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47314 * 59.99935 * 9 7 5 11 11 H 1.48506 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46996 * 299.99577 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 H 1.08998 * 112.84807 * 26.68553 * 14 13 2 16 16 C 1.53780 * 113.61412 * 255.49501 * 14 13 2 17 17 C 1.53784 * 87.07912 * 270.88196 * 16 14 13 18 18 C 1.53778 * 113.61774 * 157.99260 * 14 13 2 19 19 C 1.52999 * 113.61805 * 203.66369 * 18 14 13 20 20 C 1.53004 * 113.61397 * 334.57053 * 18 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 27 27 H 1.00902 * 111.00328 * 151.04219 * 13 2 1 28 28 H 1.08998 * 113.61746 * 25.42514 * 16 14 13 29 29 H 1.09002 * 113.61644 * 156.25142 * 16 14 13 30 30 H 1.08992 * 113.61739 * 89.11608 * 17 16 14 31 31 H 1.09001 * 113.61426 * 219.93859 * 17 16 14 32 32 H 1.09004 * 109.46481 * 59.99939 * 19 18 14 33 33 H 1.08996 * 109.47228 * 180.02562 * 19 18 14 34 34 H 1.08997 * 109.47172 * 300.00513 * 19 18 14 35 35 H 1.09002 * 109.46926 * 59.99906 * 20 18 14 36 36 H 1.08998 * 109.47056 * 179.97438 * 20 18 14 37 37 H 1.08999 * 109.47054 * 299.99792 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.6846 -1.6860 -1.2273 11 1 6.5870 -1.7610 -3.6495 12 1 6.4843 0.3700 -2.4974 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 1 1.3712 1.0449 2.2718 16 6 3.5103 0.6731 2.6980 17 6 3.5913 -0.5620 3.6105 18 6 2.0581 -0.4933 3.7076 19 6 1.5554 0.3864 4.8541 20 6 1.3794 -1.8640 3.6670 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 4.0608 -2.2443 -4.0351 27 1 2.9173 -1.1205 1.0286 28 1 4.1991 0.6383 1.8540 29 1 3.5492 1.6195 3.2374 30 1 3.9572 -1.4554 3.1046 31 1 4.0989 -0.3735 4.5565 32 1 0.5380 0.7147 4.6408 33 1 1.5662 -0.1850 5.7822 34 1 2.2041 1.2564 4.9558 35 1 1.9095 -2.5113 2.9684 36 1 1.4001 -2.3093 4.6617 37 1 0.3455 -1.7480 3.3419 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:49 Heat of formation + Delta-G solvation = -21.395597 kcal Electronic energy + Delta-G solvation = -14761.349271 eV Core-core repulsion = 12537.534474 eV Total energy + Delta-G solvation = -2223.814797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88227 -37.21509 -34.55232 -31.76775 -30.35001 -29.25832 -28.03362 -25.60256 -24.65260 -23.16367 -21.09902 -18.81636 -18.50450 -16.98959 -16.51595 -15.91307 -15.41463 -14.96275 -14.89161 -14.58966 -13.94479 -13.61194 -13.46075 -13.22507 -13.05471 -12.86485 -12.67540 -12.60293 -12.43374 -12.33209 -12.21489 -11.86227 -11.53974 -11.34390 -10.97779 -10.89871 -10.66784 -10.56981 -9.05795 -8.19890 -6.30217 1.38004 1.39822 1.47593 2.39020 3.10775 3.34743 3.68436 3.86154 3.98044 4.16185 4.35663 4.48414 4.60789 4.66320 4.72283 4.76205 4.86214 4.94408 4.98138 5.03871 5.06370 5.14272 5.21733 5.26742 5.30460 5.33767 5.39593 5.50405 5.56128 5.63244 5.76787 5.84582 6.21337 6.52111 6.70029 6.84890 7.38362 8.91618 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033138 B = 0.008926 C = 0.007718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.754093 B = 3136.025246 C = 3627.031815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.022 0.978 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.660 5.660 14 C 0.070 3.930 15 H 0.074 0.926 16 C -0.173 4.173 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.113 4.113 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.050 0.950 24 H -0.003 1.003 25 H -0.006 1.006 26 H 0.263 0.737 27 H 0.342 0.658 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 4.130 14.838 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.012 4.012 3 H 0.040 0.960 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.291 5.291 14 C -0.042 4.042 15 H 0.092 0.908 16 C -0.212 4.212 17 C -0.164 4.164 18 C -0.077 4.077 19 C -0.177 4.177 20 C -0.171 4.171 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.015 0.985 25 H 0.012 0.988 26 H 0.072 0.928 27 H 0.162 0.838 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.923 3.775 14.819 15.569 hybrid contribution 1.733 0.378 -1.031 2.051 sum -1.190 4.153 13.789 14.450 Atomic orbital electron populations 1.21700 0.94579 1.01331 1.00744 1.21402 0.94962 0.94696 0.90129 0.96035 1.19126 0.94825 0.94682 0.92288 1.21482 0.93263 1.34037 1.08293 0.92571 1.25872 1.03230 0.94847 0.95358 1.70085 1.37580 1.36690 1.12682 0.85614 0.79949 0.78437 0.77735 1.19139 1.20961 1.19579 1.60429 1.33515 1.31370 1.03783 1.22839 0.95776 0.94041 0.91496 0.90793 1.23597 0.98323 0.99407 0.99888 1.22935 0.96407 0.97371 0.99649 1.21970 0.94920 0.96419 0.94431 1.21532 1.00994 0.98824 0.96367 1.21410 1.00004 0.95377 1.00289 0.92134 0.93272 0.93053 0.98504 0.98801 0.92830 0.83801 0.93774 0.88633 0.91644 0.90250 0.92217 0.91214 0.92038 0.93894 0.92477 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.40 71.98 0.68 -3.84 16 2 C 0.10 4.12 2.46 44.92 0.11 4.23 16 3 H 0.02 0.93 7.86 -2.39 -0.02 0.92 16 4 C 0.03 1.49 4.57 29.85 0.14 1.63 16 5 C -0.53 -29.80 8.12 25.60 0.21 -29.59 16 6 H 0.06 3.02 7.49 -2.91 -0.02 3.00 16 7 C 0.01 0.29 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 9 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.66 -25.26 5.26 -466.80 -2.46 -27.71 16 14 C 0.07 2.16 3.41 45.44 0.15 2.31 16 15 H 0.07 2.25 7.43 -2.39 -0.02 2.24 16 16 C -0.17 -5.02 7.26 31.12 0.23 -4.80 16 17 C -0.13 -3.34 6.94 31.12 0.22 -3.12 16 18 C -0.08 -1.96 1.37 -51.65 -0.07 -2.03 16 19 C -0.12 -2.35 9.07 71.98 0.65 -1.70 16 20 C -0.11 -3.02 8.61 71.98 0.62 -2.40 16 21 H 0.06 1.88 7.68 -2.39 -0.02 1.86 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 23 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 26 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.34 14.64 6.55 -89.69 -0.59 14.05 16 28 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 29 H 0.10 2.35 7.66 -2.39 -0.02 2.33 16 30 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 31 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.11 7.34 -2.39 -0.02 1.09 16 35 H 0.04 1.31 7.57 -2.39 -0.02 1.30 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -60.71 293.14 3.67 -57.04 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.42 Total: 19.28 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.39 Total: -38.54 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.17 Total: -84.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.71 3.67 -57.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.646 kcal (2) G-P(sol) polarization free energy of solvation -60.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds