Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46718 * 2 1 4 4 C 1.52998 * 109.46798 * 120.00115 * 2 1 3 5 5 C 1.50699 * 109.46700 * 185.00031 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 N 1.46898 * 109.47102 * 240.00220 * 2 1 3 14 14 C 1.46904 * 111.00037 * 85.00021 * 13 2 1 15 15 H 1.08997 * 112.84951 * 336.19468 * 14 13 2 16 16 C 1.53787 * 113.61228 * 107.49707 * 14 13 2 17 17 C 1.53786 * 87.07777 * 89.11940 * 16 14 13 18 18 C 1.53778 * 87.08286 * 25.42958 * 17 16 14 19 19 C 1.53001 * 113.61592 * 220.01999 * 18 17 16 20 20 C 1.53000 * 113.61390 * 89.11420 * 18 17 16 21 21 H 1.09000 * 109.47000 * 60.00169 * 1 2 3 22 22 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47250 * 299.99818 * 1 2 3 24 24 H 1.09004 * 109.47139 * 65.00408 * 4 2 1 25 25 H 1.08997 * 109.47675 * 305.00008 * 4 2 1 26 26 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 27 27 H 1.00894 * 111.00183 * 321.04511 * 13 2 1 28 28 H 1.08995 * 113.61084 * 203.66439 * 16 14 13 29 29 H 1.08997 * 113.61813 * 334.57285 * 16 14 13 30 30 H 1.09002 * 113.61196 * 270.88317 * 17 16 14 31 31 H 1.08995 * 113.61663 * 139.98082 * 17 16 14 32 32 H 1.08998 * 109.46786 * 157.49784 * 19 18 17 33 33 H 1.09000 * 109.47087 * 277.49769 * 19 18 17 34 34 H 1.08997 * 109.46935 * 37.49510 * 19 18 17 35 35 H 1.08999 * 109.47302 * 322.50815 * 20 18 17 36 36 H 1.09007 * 109.47204 * 82.50444 * 20 18 17 37 37 H 1.08995 * 109.47170 * 202.50326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5397 7 6 4.2304 -1.1936 2.3578 8 7 5.5411 -1.1003 2.4135 9 14 3.3016 -2.1100 3.6945 10 1 3.1710 -3.5398 3.3154 11 1 1.9504 -1.5151 3.8553 12 1 4.0448 -2.0035 4.9757 13 7 2.0197 -0.6924 -1.1994 14 6 2.0825 0.2227 -2.3469 15 1 1.4067 1.0722 -2.2482 16 6 3.5154 0.6158 -2.7436 17 6 3.5161 -0.6189 -3.6604 18 6 1.9846 -0.4875 -3.7073 19 6 1.2522 -1.8294 -3.6469 20 6 1.4813 0.4155 -4.8352 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7516 -1.7716 1.2055 25 1 1.6053 -0.2619 2.1370 26 1 6.0255 -1.5077 3.1485 27 1 1.4496 -1.4978 -1.4101 28 1 3.5752 1.5606 -3.2837 29 1 4.2293 0.5504 -1.9226 30 1 3.8614 -1.5281 -3.1681 31 1 3.9987 -0.4480 -4.6227 32 1 0.2350 -1.6722 -3.2880 33 1 1.2219 -2.2720 -4.6425 34 1 1.7778 -2.4999 -2.9670 35 1 2.1614 1.2586 -4.9567 36 1 1.4381 -0.1532 -5.7642 37 1 0.4857 0.7843 -4.5885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = 5.308483 kcal Electronic energy + Delta-G solvation = -14760.498876 eV Core-core repulsion = 12537.842055 eV Total energy + Delta-G solvation = -2222.656822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.67126 -35.69035 -32.32993 -30.50101 -29.45603 -27.69366 -27.12360 -23.98424 -22.60223 -21.80203 -19.61007 -17.65666 -16.52212 -15.44483 -15.13035 -14.32008 -14.08644 -13.88918 -13.20405 -12.90892 -12.63641 -12.32927 -12.20022 -12.08725 -11.88802 -11.63222 -11.37033 -11.23409 -10.85680 -10.70964 -10.30508 -10.14397 -9.92986 -9.72350 -9.52751 -9.39602 -8.97735 -8.37186 -7.51743 -5.85724 -3.78920 3.39617 3.46703 3.49441 4.57018 4.59206 4.78236 4.92219 5.22587 5.40852 5.42624 5.50578 5.66018 5.69372 5.74463 5.81671 5.85585 5.94829 5.97819 6.00359 6.07920 6.11762 6.27389 6.38150 6.41514 6.52669 6.70639 6.77977 6.83436 6.92229 7.22935 7.39991 7.91203 8.00218 8.18544 8.78658 9.26689 9.77695 11.28441 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.008485 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.374578 B = 3299.331957 C = 3631.591045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.486 4.486 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.646 5.646 14 C 0.078 3.922 15 H 0.045 0.955 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.140 4.140 20 C -0.124 4.124 21 H 0.040 0.960 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.010 0.990 25 H 0.016 0.984 26 H 0.259 0.741 27 H 0.333 0.667 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.413 1.451 -11.783 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.041 4.041 5 C -0.524 4.524 6 H 0.095 0.905 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.217 1.217 13 N -0.277 5.277 14 C -0.033 4.033 15 H 0.063 0.937 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.101 4.101 19 C -0.197 4.197 20 C -0.181 4.181 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.154 0.846 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.605 1.471 -11.495 14.434 hybrid contribution -1.351 -0.461 0.601 1.549 sum -9.955 1.009 -10.894 14.792 Atomic orbital electron populations 1.22610 0.99614 1.01087 1.00836 1.21602 0.89550 0.98338 0.91603 0.91218 1.19601 0.97896 0.95017 0.91634 1.21054 0.89505 1.33504 1.08330 0.90453 1.25019 0.94675 0.96420 0.97867 1.69917 1.06395 1.46408 1.32366 0.86877 0.80338 0.80613 0.81908 1.20656 1.19396 1.21748 1.60389 1.57412 1.08171 1.01755 1.22622 0.96689 0.94675 0.89314 0.93673 1.22939 0.98362 0.96472 0.99706 1.22871 0.94065 0.99827 0.98797 1.22129 0.96655 0.95665 0.95653 1.21714 0.99755 0.96649 1.01589 1.21545 1.00603 0.98928 0.97039 0.94061 0.93181 0.92554 0.97164 0.96636 0.93170 0.84571 0.91331 0.89834 0.89481 0.92779 0.93190 0.92904 0.91361 0.92456 0.92705 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.15 37.16 0.34 -2.61 16 2 C 0.10 1.96 2.38 -67.71 -0.16 1.80 16 3 H 0.07 1.46 7.84 -51.93 -0.41 1.05 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 5 C -0.49 -13.97 9.39 -34.44 -0.32 -14.29 16 6 H 0.08 2.42 7.99 -52.49 -0.42 2.00 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.76 13.96 55.43 0.77 -27.98 16 9 Si 0.87 22.30 27.47 -169.99 -4.67 17.63 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 12 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 13 N -0.65 -12.03 5.83 -98.89 -0.58 -12.60 16 14 C 0.08 1.25 3.41 -66.90 -0.23 1.02 16 15 H 0.05 0.72 7.45 -51.93 -0.39 0.33 16 16 C -0.14 -2.23 7.53 -25.91 -0.20 -2.42 16 17 C -0.12 -1.74 7.11 -25.92 -0.18 -1.93 16 18 C -0.10 -1.34 1.37 -153.70 -0.21 -1.55 16 19 C -0.14 -1.74 7.93 37.16 0.29 -1.45 16 20 C -0.12 -1.38 9.07 37.16 0.34 -1.04 16 21 H 0.04 0.60 7.74 -51.93 -0.40 0.19 16 22 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.33 5.75 5.91 -39.29 -0.23 5.52 16 28 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.09 1.43 7.96 -51.93 -0.41 1.02 16 31 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.93 6.94 -51.93 -0.36 0.57 16 35 H 0.06 0.62 7.34 -51.93 -0.38 0.24 16 36 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 289.50 15.07 4.36 4.36 Total: -1.00 -30.48 289.50 -7.35 -37.83 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.71 Total: 1.77 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.53 Total: -21.00 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.20 Total: -40.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.48 -7.35 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.138 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds