Wall clock time and date at job start Sun Mar 29 2020 21:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46718 * 2 1 4 4 C 1.52998 * 109.46798 * 120.00115 * 2 1 3 5 5 C 1.50699 * 109.46700 * 185.00031 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 N 1.46898 * 109.47102 * 240.00220 * 2 1 3 14 14 C 1.46904 * 111.00037 * 85.00021 * 13 2 1 15 15 H 1.08997 * 112.84951 * 336.19468 * 14 13 2 16 16 C 1.53787 * 113.61228 * 107.49707 * 14 13 2 17 17 C 1.53786 * 87.07777 * 89.11940 * 16 14 13 18 18 C 1.53778 * 87.08286 * 25.42958 * 17 16 14 19 19 C 1.53001 * 113.61592 * 220.01999 * 18 17 16 20 20 C 1.53000 * 113.61390 * 89.11420 * 18 17 16 21 21 H 1.09000 * 109.47000 * 60.00169 * 1 2 3 22 22 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47250 * 299.99818 * 1 2 3 24 24 H 1.09004 * 109.47139 * 65.00408 * 4 2 1 25 25 H 1.08997 * 109.47675 * 305.00008 * 4 2 1 26 26 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 27 27 H 1.00894 * 111.00183 * 321.04511 * 13 2 1 28 28 H 1.08995 * 113.61084 * 203.66439 * 16 14 13 29 29 H 1.08997 * 113.61813 * 334.57285 * 16 14 13 30 30 H 1.09002 * 113.61196 * 270.88317 * 17 16 14 31 31 H 1.08995 * 113.61663 * 139.98082 * 17 16 14 32 32 H 1.08998 * 109.46786 * 157.49784 * 19 18 17 33 33 H 1.09000 * 109.47087 * 277.49769 * 19 18 17 34 34 H 1.08997 * 109.46935 * 37.49510 * 19 18 17 35 35 H 1.08999 * 109.47302 * 322.50815 * 20 18 17 36 36 H 1.09007 * 109.47204 * 82.50444 * 20 18 17 37 37 H 1.08995 * 109.47170 * 202.50326 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5397 7 6 4.2304 -1.1936 2.3578 8 7 5.5411 -1.1003 2.4135 9 14 3.3016 -2.1100 3.6945 10 1 3.1710 -3.5398 3.3154 11 1 1.9504 -1.5151 3.8553 12 1 4.0448 -2.0035 4.9757 13 7 2.0197 -0.6924 -1.1994 14 6 2.0825 0.2227 -2.3469 15 1 1.4067 1.0722 -2.2482 16 6 3.5154 0.6158 -2.7436 17 6 3.5161 -0.6189 -3.6604 18 6 1.9846 -0.4875 -3.7073 19 6 1.2522 -1.8294 -3.6469 20 6 1.4813 0.4155 -4.8352 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7516 -1.7716 1.2055 25 1 1.6053 -0.2619 2.1370 26 1 6.0255 -1.5077 3.1485 27 1 1.4496 -1.4978 -1.4101 28 1 3.5752 1.5606 -3.2837 29 1 4.2293 0.5504 -1.9226 30 1 3.8614 -1.5281 -3.1681 31 1 3.9987 -0.4480 -4.6227 32 1 0.2350 -1.6722 -3.2880 33 1 1.2219 -2.2720 -4.6425 34 1 1.7778 -2.4999 -2.9670 35 1 2.1614 1.2586 -4.9567 36 1 1.4381 -0.1532 -5.7642 37 1 0.4857 0.7843 -4.5885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:51 Heat of formation + Delta-G solvation = -14.088429 kcal Electronic energy + Delta-G solvation = -14761.339989 eV Core-core repulsion = 12537.842055 eV Total energy + Delta-G solvation = -2223.497935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90459 -37.26271 -34.51161 -31.70082 -31.05781 -29.34988 -28.10476 -25.38309 -24.40918 -23.10146 -21.28092 -18.93880 -18.72000 -16.75976 -16.60745 -15.96755 -15.51779 -15.28873 -14.79657 -14.34328 -13.97880 -13.95241 -13.50961 -13.37934 -13.25256 -13.00363 -12.81525 -12.55983 -12.30987 -12.07523 -11.91900 -11.72611 -11.55406 -11.38180 -11.19931 -10.89263 -10.70000 -10.66544 -8.93868 -8.16232 -6.14853 1.37392 1.39083 1.50267 2.43074 3.15578 3.32928 3.59858 3.78765 4.06783 4.14777 4.22997 4.37985 4.42554 4.55763 4.65254 4.70415 4.84181 4.88397 4.95710 4.96141 5.03913 5.14011 5.16066 5.20909 5.22207 5.24788 5.30395 5.37967 5.51055 5.63102 5.69069 5.78039 6.41938 6.56818 6.80521 6.93640 7.45402 9.01469 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.008485 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.374578 B = 3299.331957 C = 3631.591045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 H 0.049 0.951 4 C -0.002 4.002 5 C -0.487 4.487 6 H 0.031 0.969 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.247 1.247 12 H -0.289 1.289 13 N -0.668 5.668 14 C 0.072 3.928 15 H 0.052 0.948 16 C -0.143 4.143 17 C -0.117 4.117 18 C -0.083 4.083 19 C -0.138 4.138 20 C -0.120 4.120 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.015 0.985 25 H 0.020 0.980 26 H 0.260 0.740 27 H 0.341 0.659 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 1.014 -12.679 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.008 4.008 3 H 0.068 0.932 4 C -0.040 4.040 5 C -0.526 4.526 6 H 0.050 0.950 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.170 1.170 12 H -0.215 1.215 13 N -0.301 5.301 14 C -0.038 4.038 15 H 0.070 0.930 16 C -0.182 4.182 17 C -0.155 4.155 18 C -0.083 4.083 19 C -0.196 4.196 20 C -0.178 4.178 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.163 0.837 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.493 1.039 -12.409 16.945 hybrid contribution -0.350 -0.265 0.818 0.928 sum -11.843 0.774 -11.591 16.590 Atomic orbital electron populations 1.22440 0.95925 1.02254 1.02238 1.21373 0.92369 0.96533 0.90481 0.93236 1.19565 0.94455 0.95810 0.94129 1.21316 0.92180 1.32233 1.06850 0.95029 1.25995 0.95550 0.97740 1.00880 1.70097 1.08509 1.48161 1.33619 0.85695 0.79657 0.79255 0.78135 1.19786 1.17033 1.21545 1.60209 1.58191 1.09214 1.02495 1.22667 0.96199 0.94877 0.90055 0.93043 1.22993 0.97764 0.98513 0.98916 1.22810 0.96054 0.97702 0.98924 1.22063 0.95301 0.96415 0.94547 1.21693 0.99818 0.95638 1.02402 1.21548 1.01025 0.98643 0.96553 0.91960 0.92080 0.91885 0.96715 0.96223 0.93141 0.83675 0.89143 0.94854 0.92038 0.90746 0.92082 0.90924 0.93168 0.92276 0.90898 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 9.15 71.98 0.66 -4.34 16 2 C 0.10 4.02 2.38 44.92 0.11 4.12 16 3 H 0.05 2.11 7.84 -2.39 -0.02 2.09 16 4 C 0.00 -0.09 3.72 29.85 0.11 0.02 16 5 C -0.49 -29.01 9.39 25.60 0.24 -28.77 16 6 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 7 C -0.01 -0.45 5.47 84.65 0.46 0.02 16 8 N -0.96 -63.00 13.96 21.45 0.30 -62.70 16 9 Si 0.95 46.13 27.47 68.60 1.88 48.02 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 N -0.67 -24.94 5.83 -466.78 -2.72 -27.66 16 14 C 0.07 2.28 3.41 45.44 0.16 2.43 16 15 H 0.05 1.56 7.45 -2.39 -0.02 1.54 16 16 C -0.14 -4.82 7.53 31.12 0.23 -4.59 16 17 C -0.12 -3.44 7.11 31.12 0.22 -3.22 16 18 C -0.08 -2.04 1.37 -51.66 -0.07 -2.11 16 19 C -0.14 -3.10 7.93 71.98 0.57 -2.53 16 20 C -0.12 -2.25 9.07 71.98 0.65 -1.60 16 21 H 0.06 1.59 7.74 -2.39 -0.02 1.57 16 22 H 0.06 1.68 8.13 -2.38 -0.02 1.66 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 24 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 25 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 26 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 27 H 0.34 11.46 5.91 -89.70 -0.53 10.93 16 28 H 0.09 2.58 7.65 -2.39 -0.02 2.56 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 2.10 7.96 -2.39 -0.02 2.08 16 31 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.31 6.94 -2.39 -0.02 1.29 16 35 H 0.06 1.10 7.34 -2.39 -0.02 1.08 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.43 289.50 3.23 -65.20 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.42 Total: 17.70 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 3.34 Total: -40.56 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.42 Total: -90.36 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.88 Total: 48.02 kcal Total: -68.43 3.23 -65.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.110 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds