Wall clock time and date at job start Sun Mar 29 2020 21:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99999 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00020 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47316 * 90.00154 * 9 7 5 11 11 H 1.48500 * 109.47365 * 209.99682 * 9 7 5 12 12 H 1.48498 * 109.47206 * 330.00392 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 H 1.08998 * 112.84568 * 334.66683 * 14 13 2 16 16 C 1.53779 * 113.61355 * 105.85987 * 14 13 2 17 17 C 1.54053 * 86.98664 * 89.16479 * 16 14 13 18 18 C 1.53775 * 113.61552 * 203.46812 * 14 13 2 19 19 C 1.52995 * 113.61593 * 25.43280 * 18 14 13 20 20 C 1.53006 * 113.61429 * 156.33532 * 18 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 119.99988 * 180.02562 * 8 7 5 27 27 H 1.00906 * 111.00118 * 38.95572 * 13 2 1 28 28 H 1.09002 * 113.61046 * 203.66483 * 16 14 13 29 29 H 1.08996 * 113.61808 * 334.56709 * 16 14 13 30 30 H 1.08998 * 113.61076 * 270.88084 * 17 16 14 31 31 H 1.09003 * 113.61837 * 139.97494 * 17 16 14 32 32 H 1.08995 * 109.47544 * 59.99943 * 19 18 14 33 33 H 1.09003 * 109.47166 * 180.02562 * 19 18 14 34 34 H 1.09003 * 109.46933 * 299.99714 * 19 18 14 35 35 H 1.08994 * 109.47304 * 60.00021 * 20 18 14 36 36 H 1.08997 * 109.47220 * 180.02562 * 20 18 14 37 37 H 1.09001 * 109.46851 * 299.99992 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 5.5411 -1.1001 -2.4135 9 14 3.3016 -2.1096 -3.6948 10 1 2.9399 -1.1653 -4.7824 11 1 4.1605 -3.1900 -4.2427 12 1 2.0660 -2.7017 -3.1222 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 1 2.1949 1.2655 2.0508 16 6 0.9671 -0.0078 3.3801 17 6 1.9166 -1.0118 4.0609 18 6 3.0762 -0.2199 3.4338 19 6 4.2078 -1.1043 2.9065 20 6 3.5778 0.9296 4.3102 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 6.0255 -1.5068 -3.1490 27 1 1.4496 -1.4980 1.4100 28 1 0.7489 0.8691 3.9897 29 1 0.0716 -0.4666 2.9610 30 1 1.8246 -2.0282 3.6780 31 1 1.8942 -0.9649 5.1497 32 1 4.7735 -0.5588 2.1513 33 1 4.8687 -1.3777 3.7291 34 1 3.7870 -2.0071 2.4636 35 1 2.7324 1.3983 4.8138 36 1 4.2747 0.5424 5.0535 37 1 4.0841 1.6671 3.6874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:55 Heat of formation + Delta-G solvation = 4.137506 kcal Electronic energy + Delta-G solvation = -14791.125013 eV Core-core repulsion = 12568.417414 eV Total energy + Delta-G solvation = -2222.707599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69705 -35.68336 -32.35325 -30.47240 -29.10338 -27.69240 -26.86517 -24.12739 -22.52820 -21.98172 -19.75362 -17.66845 -16.50106 -15.31203 -14.89427 -14.12842 -13.98503 -13.90615 -13.27475 -12.86705 -12.71855 -12.33201 -12.19589 -11.98363 -11.74192 -11.67066 -11.28190 -10.99688 -10.83343 -10.66252 -10.40305 -10.26379 -9.92498 -9.68538 -9.54693 -9.33745 -8.95058 -8.37341 -7.52959 -5.85765 -3.78936 3.38880 3.46704 3.49901 4.58397 4.59366 4.84171 4.96809 5.10687 5.33651 5.49689 5.58759 5.65742 5.72346 5.79847 5.85597 5.92743 6.00204 6.08120 6.11424 6.15115 6.27099 6.34843 6.37894 6.51321 6.56153 6.66152 6.84606 6.87854 7.12526 7.21104 7.40230 7.89761 7.98867 8.16800 8.78273 9.26617 9.77720 11.28357 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035243 B = 0.009063 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.299515 B = 3088.731010 C = 3597.775387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.485 4.485 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.638 5.638 14 C 0.084 3.916 15 H 0.075 0.925 16 C -0.175 4.175 17 C -0.130 4.130 18 C -0.083 4.083 19 C -0.115 4.115 20 C -0.125 4.125 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.258 0.742 27 H 0.332 0.668 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 1.806 11.369 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.523 4.523 6 H 0.095 0.905 7 C -0.140 4.140 8 N -0.550 5.550 9 Si 0.702 3.298 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.266 5.266 14 C -0.028 4.028 15 H 0.093 0.907 16 C -0.215 4.215 17 C -0.168 4.168 18 C -0.083 4.083 19 C -0.173 4.173 20 C -0.182 4.182 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.785 1.822 11.065 13.651 hybrid contribution -1.405 -0.461 -0.571 1.585 sum -9.190 1.361 10.494 14.015 Atomic orbital electron populations 1.22647 0.99542 1.01085 1.00908 1.21625 0.89647 0.98182 0.91536 0.91235 1.19613 0.97865 0.95348 0.91423 1.21040 0.89481 1.33445 1.08363 0.90453 1.25014 0.94676 0.96385 0.97887 1.69917 1.06397 1.46421 1.32295 0.86887 0.80201 0.80019 0.82691 1.20754 1.21728 1.19355 1.60236 1.56780 1.07807 1.01781 1.22721 0.93908 0.96387 0.89775 0.90703 1.23720 0.97759 0.99701 1.00281 1.23043 0.96517 0.98259 0.98971 1.21936 0.94888 0.95966 0.95557 1.21437 0.96635 0.99893 0.99320 1.21550 1.00351 0.97463 0.98861 0.93848 0.93211 0.92670 0.96693 0.97107 0.93185 0.84976 0.90661 0.92046 0.90270 0.92400 0.91749 0.94823 0.91829 0.93180 0.92742 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.16 37.16 0.34 -2.55 16 2 C 0.10 1.93 2.53 -67.71 -0.17 1.76 16 3 H 0.07 1.42 7.47 -51.93 -0.39 1.03 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.22 16 5 C -0.48 -13.81 9.39 -34.44 -0.32 -14.13 16 6 H 0.08 2.40 7.99 -52.48 -0.42 1.99 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.59 13.96 55.43 0.77 -27.81 16 9 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.64 -11.58 4.92 -98.90 -0.49 -12.07 16 14 C 0.08 1.31 3.53 -66.90 -0.24 1.07 16 15 H 0.07 1.23 7.45 -51.93 -0.39 0.84 16 16 C -0.18 -2.24 7.15 -25.78 -0.18 -2.43 16 17 C -0.13 -1.68 6.96 -25.78 -0.18 -1.86 16 18 C -0.08 -1.21 1.37 -153.70 -0.21 -1.42 16 19 C -0.12 -1.95 8.61 37.15 0.32 -1.63 16 20 C -0.12 -1.58 9.07 37.16 0.34 -1.25 16 21 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.33 5.63 7.83 -39.29 -0.31 5.32 16 28 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 29 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 30 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 35 H 0.05 0.56 7.34 -51.93 -0.38 0.18 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -30.02 290.77 -7.29 -37.31 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.78 Total: 1.66 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.51 Total: -20.99 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.29 Total: -39.88 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.02 -7.29 -37.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.444 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds