Wall clock time and date at job start Sun Mar 29 2020 21:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99999 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00020 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47316 * 90.00154 * 9 7 5 11 11 H 1.48500 * 109.47365 * 209.99682 * 9 7 5 12 12 H 1.48498 * 109.47206 * 330.00392 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 H 1.08998 * 112.84568 * 334.66683 * 14 13 2 16 16 C 1.53779 * 113.61355 * 105.85987 * 14 13 2 17 17 C 1.54053 * 86.98664 * 89.16479 * 16 14 13 18 18 C 1.53775 * 113.61552 * 203.46812 * 14 13 2 19 19 C 1.52995 * 113.61593 * 25.43280 * 18 14 13 20 20 C 1.53006 * 113.61429 * 156.33532 * 18 14 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 25 25 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 26 26 H 0.97000 * 119.99988 * 180.02562 * 8 7 5 27 27 H 1.00906 * 111.00118 * 38.95572 * 13 2 1 28 28 H 1.09002 * 113.61046 * 203.66483 * 16 14 13 29 29 H 1.08996 * 113.61808 * 334.56709 * 16 14 13 30 30 H 1.08998 * 113.61076 * 270.88084 * 17 16 14 31 31 H 1.09003 * 113.61837 * 139.97494 * 17 16 14 32 32 H 1.08995 * 109.47544 * 59.99943 * 19 18 14 33 33 H 1.09003 * 109.47166 * 180.02562 * 19 18 14 34 34 H 1.09003 * 109.46933 * 299.99714 * 19 18 14 35 35 H 1.08994 * 109.47304 * 60.00021 * 20 18 14 36 36 H 1.08997 * 109.47220 * 180.02562 * 20 18 14 37 37 H 1.09001 * 109.46851 * 299.99992 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 5.5411 -1.1001 -2.4135 9 14 3.3016 -2.1096 -3.6948 10 1 2.9399 -1.1653 -4.7824 11 1 4.1605 -3.1900 -4.2427 12 1 2.0660 -2.7017 -3.1222 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 1 2.1949 1.2655 2.0508 16 6 0.9671 -0.0078 3.3801 17 6 1.9166 -1.0118 4.0609 18 6 3.0762 -0.2199 3.4338 19 6 4.2078 -1.1043 2.9065 20 6 3.5778 0.9296 4.3102 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.7517 -1.7714 -1.2057 25 1 1.6054 -0.2616 -2.1371 26 1 6.0255 -1.5068 -3.1490 27 1 1.4496 -1.4980 1.4100 28 1 0.7489 0.8691 3.9897 29 1 0.0716 -0.4666 2.9610 30 1 1.8246 -2.0282 3.6780 31 1 1.8942 -0.9649 5.1497 32 1 4.7735 -0.5588 2.1513 33 1 4.8687 -1.3777 3.7291 34 1 3.7870 -2.0071 2.4636 35 1 2.7324 1.3983 4.8138 36 1 4.2747 0.5424 5.0535 37 1 4.0841 1.6671 3.6874 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:55 Heat of formation + Delta-G solvation = -14.555703 kcal Electronic energy + Delta-G solvation = -14791.935611 eV Core-core repulsion = 12568.417414 eV Total energy + Delta-G solvation = -2223.518197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89314 -37.22846 -34.50603 -31.87194 -30.57390 -29.35609 -28.05779 -25.40184 -24.39149 -23.12899 -21.42203 -18.94213 -18.68608 -16.66692 -16.36366 -15.85824 -15.27352 -15.21969 -14.70912 -14.64149 -13.98462 -13.88534 -13.79733 -13.37728 -13.14891 -13.00132 -12.78479 -12.42304 -12.24646 -12.13945 -11.99958 -11.59897 -11.57937 -11.42456 -11.18590 -10.85548 -10.66842 -10.59560 -8.88720 -8.14913 -6.13101 1.37336 1.39679 1.50789 2.43873 3.16956 3.33903 3.70069 3.87582 3.99018 4.13363 4.24955 4.43771 4.50009 4.55799 4.71618 4.77965 4.88273 4.90722 4.95734 4.98736 5.08124 5.12905 5.16247 5.21294 5.22702 5.30676 5.31857 5.43457 5.57388 5.63959 5.73738 5.79507 6.43102 6.58200 6.81704 6.95380 7.47037 9.02684 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035243 B = 0.009063 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.299515 B = 3088.731010 C = 3597.775387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.003 4.003 5 C -0.484 4.484 6 H 0.032 0.968 7 C -0.007 4.007 8 N -0.960 5.960 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.249 1.249 13 N -0.660 5.660 14 C 0.072 3.928 15 H 0.060 0.940 16 C -0.155 4.155 17 C -0.120 4.120 18 C -0.089 4.089 19 C -0.109 4.109 20 C -0.121 4.121 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.259 0.741 27 H 0.338 0.662 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 1.398 12.339 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 H 0.068 0.932 4 C -0.041 4.041 5 C -0.522 4.522 6 H 0.050 0.950 7 C -0.201 4.201 8 N -0.603 5.603 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.172 1.172 13 N -0.289 5.289 14 C -0.039 4.039 15 H 0.078 0.922 16 C -0.195 4.195 17 C -0.157 4.157 18 C -0.090 4.090 19 C -0.166 4.166 20 C -0.178 4.178 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.158 0.842 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.575 1.424 12.053 16.098 hybrid contribution -0.436 -0.284 -0.814 0.967 sum -11.012 1.140 11.239 15.776 Atomic orbital electron populations 1.22473 0.95957 1.02137 1.02268 1.21380 0.92374 0.96408 0.90369 0.93154 1.19583 0.94445 0.95979 0.94078 1.21288 0.92125 1.32046 1.06769 0.94987 1.25974 0.95533 0.97749 1.00888 1.70098 1.08478 1.48215 1.33538 0.85718 0.79231 0.78594 0.79329 1.19623 1.21743 1.17244 1.60083 1.57563 1.08765 1.02486 1.22775 0.96424 0.95030 0.89714 0.92209 1.23598 0.96855 1.00265 0.98742 1.22960 0.94834 0.97749 1.00165 1.22058 0.94360 0.96672 0.95929 1.21340 0.97488 0.99148 0.98641 1.21530 1.01318 0.96445 0.98544 0.91740 0.92240 0.92095 0.96585 0.96501 0.93208 0.84239 0.88722 0.91197 0.90747 0.90229 0.96120 0.93110 0.93441 0.90971 0.91646 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 9.16 71.98 0.66 -4.23 16 2 C 0.10 4.01 2.53 44.92 0.11 4.12 16 3 H 0.05 2.09 7.47 -2.39 -0.02 2.07 16 4 C 0.00 -0.14 3.72 29.85 0.11 -0.03 16 5 C -0.48 -28.48 9.39 25.60 0.24 -28.24 16 6 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 7 C -0.01 -0.43 5.47 84.65 0.46 0.03 16 8 N -0.96 -62.62 13.96 21.45 0.30 -62.33 16 9 Si 0.95 45.98 27.47 68.60 1.88 47.87 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 13 N -0.66 -23.91 4.92 -466.80 -2.30 -26.20 16 14 C 0.07 2.18 3.53 45.44 0.16 2.34 16 15 H 0.06 1.97 7.45 -2.39 -0.02 1.96 16 16 C -0.16 -3.47 7.15 31.21 0.22 -3.25 16 17 C -0.12 -2.75 6.96 31.21 0.22 -2.53 16 18 C -0.09 -2.53 1.37 -51.66 -0.07 -2.60 16 19 C -0.11 -3.80 8.61 71.98 0.62 -3.18 16 20 C -0.12 -2.88 9.07 71.98 0.65 -2.23 16 21 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 22 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 25 H 0.02 0.77 7.57 -2.39 -0.02 0.76 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.34 11.11 7.83 -89.69 -0.70 10.41 16 28 H 0.09 1.80 7.66 -2.39 -0.02 1.78 16 29 H 0.07 1.49 7.84 -2.39 -0.02 1.47 16 30 H 0.07 1.80 7.86 -2.39 -0.02 1.78 16 31 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.76 7.57 -2.39 -0.02 1.74 16 35 H 0.07 1.40 7.34 -2.39 -0.02 1.39 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -67.28 290.77 3.53 -63.75 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.25 Total: 16.71 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.39 Total: -39.80 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -2.00 Total: -88.53 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.87 kcal Total: -67.28 3.53 -63.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.197 kcal (2) G-P(sol) polarization free energy of solvation -67.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds