Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48502 * 109.46949 * 239.99735 * 3 2 1 5 5 H 1.48499 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47429 * 119.99689 * 3 2 1 7 7 C 1.37875 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99800 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.34785 * 120.00054 * 179.97438 * 10 9 7 12 12 O 1.21635 * 119.99650 * 0.02562 * 11 10 9 13 13 C 1.47100 * 120.00196 * 179.97438 * 11 10 9 14 14 C 1.38388 * 127.99684 * 179.70290 * 13 11 10 15 15 C 1.37583 * 111.25923 * 180.26525 * 14 13 11 16 16 N 1.29560 * 117.94801 * 0.02562 * 15 14 13 17 17 S 1.56300 * 110.38423 * 359.97438 * 16 15 14 18 18 H 0.97008 * 119.99903 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47293 * 59.99952 * 9 7 2 20 20 H 1.08996 * 109.47308 * 299.99929 * 9 7 2 21 21 H 0.96999 * 120.00603 * 0.02562 * 10 9 7 22 22 H 1.07998 * 124.36951 * 0.24655 * 14 13 11 23 23 H 1.08000 * 121.02126 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5578 -5.1056 0.0011 13 6 2.7096 -6.0015 0.0005 14 6 2.4343 -7.3577 0.0065 15 6 3.5916 -8.1017 0.0096 16 7 4.7212 -7.4673 0.0072 17 16 4.4785 -5.9233 0.0002 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1567 -3.4355 0.0009 22 1 1.4394 -7.7778 0.0089 23 1 3.5593 -9.1812 0.0149 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705398997.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = -0.570095 kcal Electronic energy + Delta-G solvation = -11232.951569 eV Core-core repulsion = 8979.867510 eV Total energy + Delta-G solvation = -2253.084059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.45130 -38.40100 -34.34023 -32.47215 -31.36156 -27.72870 -25.63936 -23.06567 -21.18550 -19.80050 -18.42289 -17.05392 -16.01398 -15.22583 -14.96676 -14.77788 -14.13962 -14.00677 -13.27326 -12.92592 -12.05428 -11.95173 -11.31798 -11.00507 -10.91464 -10.74271 -10.35708 -9.58823 -9.49949 -9.44889 -8.84424 -8.79567 -8.04274 -6.21497 -4.29247 0.41710 1.36057 1.91666 2.28914 3.23679 3.28532 3.29859 3.60142 3.80607 4.31441 4.94647 5.02729 5.14882 5.35587 5.73224 5.86806 6.49221 7.17945 7.21875 7.41369 7.56910 7.88633 8.42582 8.64637 8.87548 9.37094 10.88532 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.006954 C = 0.006240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.928515 B = 4025.324709 C = 4486.106112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.700 5.700 11 C 0.575 3.425 12 O -0.537 6.537 13 C -0.245 4.245 14 C -0.127 4.127 15 C 0.058 3.942 16 N -0.531 5.531 17 S 0.411 5.589 18 H 0.267 0.733 19 H 0.032 0.968 20 H 0.032 0.968 21 H 0.390 0.610 22 H 0.174 0.826 23 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.958 -10.805 0.010 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.357 3.643 12 O -0.416 6.416 13 C -0.379 4.379 14 C -0.162 4.162 15 C -0.135 4.135 16 N -0.360 5.360 17 S 0.565 5.435 18 H 0.077 0.923 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.223 0.777 22 H 0.191 0.809 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.995 -10.091 0.007 13.518 hybrid contribution -0.806 -0.032 0.004 0.807 sum 8.189 -10.123 0.011 13.021 Atomic orbital electron populations 1.69960 1.06124 1.27574 1.48484 1.24946 0.94943 0.99505 0.94527 0.86439 0.79405 0.82107 0.78776 1.19985 1.21031 1.19981 1.21158 0.93322 0.90255 1.53813 0.91755 1.19233 0.88127 0.81501 0.98220 1.46439 1.11357 1.05666 1.71317 1.16849 0.86830 0.82028 0.78563 1.90791 1.15227 1.84457 1.51076 1.27291 1.01080 0.98875 1.10701 1.22104 1.01338 0.91116 1.01628 1.22250 0.85847 1.02827 1.02551 1.72201 1.31494 1.08269 1.24052 1.81727 0.98193 1.04218 1.59340 0.92282 0.94990 0.94983 0.77666 0.80892 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.29 55.43 0.74 -24.77 14 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 14 3 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 14 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 14 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 14 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 14 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 14 9 C 0.25 6.45 5.43 -5.19 -0.03 6.42 14 10 N -0.70 -14.64 5.54 -62.67 -0.35 -14.99 14 11 C 0.57 11.64 7.80 -12.66 -0.10 11.54 14 12 O -0.54 -12.80 16.96 5.25 0.09 -12.71 14 13 C -0.25 -3.87 6.76 -35.93 -0.24 -4.11 14 14 C -0.13 -1.68 10.40 -39.77 -0.41 -2.09 14 15 C 0.06 0.67 11.15 -18.75 -0.21 0.47 14 16 N -0.53 -7.07 11.29 21.64 0.24 -6.83 14 17 S 0.41 5.39 22.81 -107.50 -2.45 2.93 14 18 H 0.27 7.25 8.31 -40.82 -0.34 6.91 14 19 H 0.03 0.91 8.14 -51.93 -0.42 0.48 14 20 H 0.03 0.91 8.14 -51.93 -0.42 0.49 14 21 H 0.39 7.02 7.70 -40.82 -0.31 6.71 14 22 H 0.17 2.05 8.06 -52.49 -0.42 1.62 14 23 H 0.18 1.44 8.06 -52.49 -0.42 1.01 14 LS Contribution 233.03 15.07 3.51 3.51 Total: -1.00 -31.10 233.03 -6.19 -37.29 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.54 Total: 1.10 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.41 Total: -0.94 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.63 Total: -46.59 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -2.45 Total: 2.93 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.10 -6.19 -37.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705398997.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.721 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds