Wall clock time and date at job start Sun Mar 29 2020 21:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36841 * 119.99515 * 2 1 4 4 H 1.07996 * 119.99703 * 148.32919 * 3 2 1 5 5 C 1.39049 * 120.00356 * 328.05067 * 3 2 1 6 6 N 1.31358 * 120.00161 * 164.39632 * 5 3 2 7 7 Si 1.86806 * 119.99781 * 344.40354 * 5 3 2 8 8 H 1.48502 * 109.47013 * 89.06123 * 7 5 3 9 9 H 1.48500 * 109.46995 * 209.05547 * 7 5 3 10 10 H 1.48495 * 109.47400 * 329.05801 * 7 5 3 11 11 C 1.34777 * 120.00195 * 180.02562 * 2 1 3 12 12 O 1.21671 * 119.99555 * 175.41503 * 11 2 1 13 13 C 1.46953 * 119.99925 * 355.41281 * 11 2 1 14 14 C 1.38493 * 128.00018 * 185.31108 * 13 11 2 15 15 C 1.37543 * 111.24517 * 179.88643 * 14 13 11 16 16 N 1.29572 * 117.95954 * 0.43041 * 15 14 13 17 17 S 1.56305 * 110.39591 * 359.75510 * 16 15 14 18 18 H 1.08996 * 109.47041 * 359.39176 * 1 2 3 19 19 H 1.08998 * 109.47151 * 119.39623 * 1 2 3 20 20 H 1.09006 * 109.46417 * 239.39546 * 1 2 3 21 21 H 0.97008 * 120.00096 * 179.97438 * 6 5 3 22 22 H 1.08002 * 124.37780 * 0.02562 * 14 13 11 23 23 H 1.08003 * 121.02810 * 180.16359 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1085 1.2548 0.4911 5 6 1.6119 2.2981 -0.6372 6 7 2.0948 3.4942 -0.3886 7 14 0.2031 2.0925 -1.8466 8 1 -1.0892 2.1696 -1.1190 9 1 0.2631 3.1720 -2.8646 10 1 0.3154 0.7725 -2.5176 11 6 2.1390 -1.1672 -0.0005 12 8 3.3528 -1.1687 -0.0848 13 6 1.4078 -2.4379 0.1007 14 6 1.9301 -3.7153 0.2164 15 6 0.9308 -4.6576 0.2890 16 7 -0.2968 -4.2468 0.2333 17 16 -0.3447 -2.6906 0.0952 18 1 -0.3633 1.0276 0.0109 19 1 -0.3633 -0.5044 -0.8953 20 1 -0.3632 -0.5232 0.8846 21 1 1.7202 4.2706 -0.8335 22 1 2.9856 -3.9420 0.2481 23 1 1.1622 -5.7082 0.3849 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705399651.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:53 Heat of formation + Delta-G solvation = 28.739711 kcal Electronic energy + Delta-G solvation = -11898.003388 eV Core-core repulsion = 9646.190297 eV Total energy + Delta-G solvation = -2251.813091 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.12695 -38.32020 -35.01710 -32.37727 -30.94009 -26.92490 -26.44265 -24.35415 -21.32092 -18.92270 -17.83630 -17.33402 -16.06793 -15.90319 -14.95111 -14.59222 -13.85014 -13.60238 -13.17811 -12.70957 -12.60951 -12.40197 -12.06446 -10.96183 -10.83032 -10.69642 -10.10496 -9.97887 -9.40777 -9.18572 -8.84922 -8.50977 -8.02570 -6.61063 -4.12387 0.75128 1.69571 2.31138 2.60466 2.89681 3.10390 3.11266 3.90222 3.94711 4.12754 4.84084 5.16953 5.35411 5.46976 5.59815 5.75085 5.99857 6.04214 6.21982 6.86721 7.28092 7.99542 8.26464 8.70339 9.04026 9.50552 10.49278 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.050616 B = 0.011476 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.055236 B = 2439.238434 C = 2845.759819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.443 5.443 3 C -0.304 4.304 4 H 0.117 0.883 5 C 0.055 3.945 6 N -0.851 5.851 7 Si 0.885 3.115 8 H -0.269 1.269 9 H -0.284 1.284 10 H -0.261 1.261 11 C 0.516 3.484 12 O -0.555 6.555 13 C -0.218 4.218 14 C -0.152 4.152 15 C 0.064 3.936 16 N -0.563 5.563 17 S 0.388 5.612 18 H 0.098 0.902 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.280 0.720 22 H 0.169 0.831 23 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -8.890 0.050 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.162 5.162 3 C -0.433 4.433 4 H 0.135 0.865 5 C -0.153 4.153 6 N -0.486 5.486 7 Si 0.712 3.288 8 H -0.196 1.196 9 H -0.210 1.210 10 H -0.186 1.186 11 C 0.305 3.695 12 O -0.438 6.438 13 C -0.352 4.352 14 C -0.187 4.187 15 C -0.128 4.128 16 N -0.390 5.390 17 S 0.542 5.458 18 H 0.116 0.884 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.090 0.910 22 H 0.186 0.814 23 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.419 -8.429 -0.080 11.914 hybrid contribution 0.999 -0.614 -0.558 1.299 sum -7.420 -9.044 -0.638 11.715 Atomic orbital electron populations 1.22430 0.83685 1.04236 1.01127 1.43606 1.04016 1.05888 1.62707 1.19292 1.06492 0.83683 1.33814 0.86544 1.25442 0.98351 0.94785 0.96703 1.69649 1.41269 0.98149 1.39546 0.86955 0.81286 0.79086 0.81475 1.19581 1.21028 1.18558 1.16567 0.86975 0.81060 0.84888 1.90698 1.12626 1.85692 1.54812 1.27289 0.99759 0.99408 1.08771 1.21945 1.02160 0.90266 1.04351 1.22119 0.86182 1.02245 1.02267 1.72105 1.26654 1.15228 1.25055 1.82054 1.04597 0.98388 1.60754 0.88385 0.92227 0.91516 0.90959 0.81406 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 6.48 59.85 0.39 0.98 14 2 N -0.44 -10.60 2.72 -123.60 -0.34 -10.94 14 3 C -0.30 -8.32 9.52 -15.02 -0.14 -8.47 14 4 H 0.12 3.56 7.83 -52.49 -0.41 3.15 14 5 C 0.06 1.44 5.29 -17.45 -0.09 1.35 14 6 N -0.85 -23.36 13.95 55.50 0.77 -22.59 14 7 Si 0.89 19.26 24.35 -169.99 -4.14 15.12 14 8 H -0.27 -5.27 6.50 56.52 0.37 -4.90 14 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 14 10 H -0.26 -5.65 6.75 56.52 0.38 -5.27 14 11 C 0.52 12.34 7.60 -12.73 -0.10 12.25 14 12 O -0.56 -15.21 16.79 5.21 0.09 -15.12 14 13 C -0.22 -4.21 6.55 -35.96 -0.24 -4.44 14 14 C -0.15 -2.52 10.41 -39.74 -0.41 -2.93 14 15 C 0.06 0.94 11.14 -18.76 -0.21 0.73 14 16 N -0.56 -9.08 11.29 21.67 0.24 -8.84 14 17 S 0.39 6.24 18.48 -107.50 -1.99 4.25 14 18 H 0.10 1.91 4.05 -51.93 -0.21 1.70 14 19 H 0.06 1.05 6.00 -51.90 -0.31 0.74 14 20 H 0.07 1.10 6.36 -46.24 -0.29 0.80 14 21 H 0.28 7.04 8.31 -40.82 -0.34 6.70 14 22 H 0.17 2.55 8.06 -52.49 -0.42 2.12 14 23 H 0.17 1.85 8.06 -52.48 -0.42 1.43 14 LS Contribution 213.60 15.07 3.22 3.22 Total: -1.00 -30.55 213.60 -4.20 -34.75 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -1.26 Total: 0.68 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.80 Total: -0.53 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.68 Total: -42.37 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.14 Total: 15.12 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.99 Total: 4.25 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -30.55 -4.20 -34.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705399651.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.487 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds