Wall clock time and date at job start Sun Mar 29 2020 21:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36841 * 119.99515 * 2 1 4 4 H 1.07996 * 119.99703 * 148.32919 * 3 2 1 5 5 C 1.39049 * 120.00356 * 328.05067 * 3 2 1 6 6 N 1.31358 * 120.00161 * 164.39632 * 5 3 2 7 7 Si 1.86806 * 119.99781 * 344.40354 * 5 3 2 8 8 H 1.48502 * 109.47013 * 89.06123 * 7 5 3 9 9 H 1.48500 * 109.46995 * 209.05547 * 7 5 3 10 10 H 1.48495 * 109.47400 * 329.05801 * 7 5 3 11 11 C 1.34777 * 120.00195 * 180.02562 * 2 1 3 12 12 O 1.21671 * 119.99555 * 175.41503 * 11 2 1 13 13 C 1.46953 * 119.99925 * 355.41281 * 11 2 1 14 14 C 1.38493 * 128.00018 * 185.31108 * 13 11 2 15 15 C 1.37543 * 111.24517 * 179.88643 * 14 13 11 16 16 N 1.29572 * 117.95954 * 0.43041 * 15 14 13 17 17 S 1.56305 * 110.39591 * 359.75510 * 16 15 14 18 18 H 1.08996 * 109.47041 * 359.39176 * 1 2 3 19 19 H 1.08998 * 109.47151 * 119.39623 * 1 2 3 20 20 H 1.09006 * 109.46417 * 239.39546 * 1 2 3 21 21 H 0.97008 * 120.00096 * 179.97438 * 6 5 3 22 22 H 1.08002 * 124.37780 * 0.02562 * 14 13 11 23 23 H 1.08003 * 121.02810 * 180.16359 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1085 1.2548 0.4911 5 6 1.6119 2.2981 -0.6372 6 7 2.0948 3.4942 -0.3886 7 14 0.2031 2.0925 -1.8466 8 1 -1.0892 2.1696 -1.1190 9 1 0.2631 3.1720 -2.8646 10 1 0.3154 0.7725 -2.5176 11 6 2.1390 -1.1672 -0.0005 12 8 3.3528 -1.1687 -0.0848 13 6 1.4078 -2.4379 0.1007 14 6 1.9301 -3.7153 0.2164 15 6 0.9308 -4.6576 0.2890 16 7 -0.2968 -4.2468 0.2333 17 16 -0.3447 -2.6906 0.0952 18 1 -0.3633 1.0276 0.0109 19 1 -0.3633 -0.5044 -0.8953 20 1 -0.3632 -0.5232 0.8846 21 1 1.7202 4.2706 -0.8335 22 1 2.9856 -3.9420 0.2481 23 1 1.1622 -5.7082 0.3849 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705399651.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:53 Heat of formation + Delta-G solvation = 5.605644 kcal Electronic energy + Delta-G solvation = -11899.006556 eV Core-core repulsion = 9646.190297 eV Total energy + Delta-G solvation = -2252.816259 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.78303 -39.80059 -36.91372 -34.32131 -32.39755 -28.60798 -28.08930 -25.93373 -22.86854 -20.43957 -19.46354 -19.17380 -17.71223 -17.46195 -16.58085 -16.19878 -15.29031 -15.22171 -14.74991 -14.44614 -14.18661 -14.05351 -13.75325 -12.64414 -12.44175 -12.27185 -11.84787 -11.39790 -11.21844 -10.72476 -10.63506 -10.01410 -9.66881 -8.58272 -6.21554 -0.63975 0.32202 1.03085 1.18268 1.28611 1.39876 1.45057 2.12233 2.16572 2.44067 2.93532 3.64650 4.02143 4.11643 4.21158 4.27637 4.52221 4.81806 4.96840 5.38894 5.61230 5.89903 6.37275 6.74339 7.08203 7.62525 8.57481 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.050616 B = 0.011476 C = 0.009837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.055236 B = 2439.238434 C = 2845.759819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.457 5.457 3 C -0.336 4.336 4 H 0.056 0.944 5 C 0.011 3.989 6 N -0.902 5.902 7 Si 0.949 3.051 8 H -0.223 1.223 9 H -0.285 1.285 10 H -0.257 1.257 11 C 0.517 3.483 12 O -0.607 6.607 13 C -0.269 4.269 14 C -0.129 4.129 15 C 0.073 3.927 16 N -0.562 5.562 17 S 0.441 5.559 18 H 0.098 0.902 19 H 0.083 0.917 20 H 0.095 0.905 21 H 0.286 0.714 22 H 0.177 0.823 23 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -11.473 -0.576 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.177 5.177 3 C -0.464 4.464 4 H 0.074 0.926 5 C -0.193 4.193 6 N -0.538 5.538 7 Si 0.771 3.229 8 H -0.146 1.146 9 H -0.212 1.212 10 H -0.181 1.181 11 C 0.307 3.693 12 O -0.493 6.493 13 C -0.403 4.403 14 C -0.166 4.166 15 C -0.119 4.119 16 N -0.391 5.391 17 S 0.596 5.404 18 H 0.116 0.884 19 H 0.101 0.899 20 H 0.113 0.887 21 H 0.096 0.904 22 H 0.195 0.805 23 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.506 -10.988 -0.682 15.924 hybrid contribution 1.992 -0.078 -0.278 2.013 sum -9.513 -11.066 -0.960 14.625 Atomic orbital electron populations 1.22646 0.80569 1.05088 1.03586 1.43603 1.05931 1.04688 1.63441 1.18824 1.05725 0.86085 1.35796 0.92601 1.26273 1.01619 0.93656 0.97740 1.69767 1.43765 0.99217 1.41078 0.85956 0.79408 0.78939 0.78623 1.14648 1.21163 1.18057 1.17224 0.86710 0.82583 0.82765 1.90644 1.15227 1.87032 1.56434 1.26894 1.02557 0.97973 1.12849 1.22313 1.03385 0.89591 1.01267 1.22535 0.84816 1.03805 1.00695 1.72162 1.27288 1.15194 1.24407 1.81778 1.01064 0.98163 1.59348 0.88415 0.89930 0.88700 0.90410 0.80532 0.76815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.90 6.48 127.77 0.83 1.73 14 2 N -0.46 -22.23 2.72 -663.17 -1.80 -24.04 14 3 C -0.34 -19.46 9.52 84.11 0.80 -18.66 14 4 H 0.06 3.78 7.83 -2.91 -0.02 3.76 14 5 C 0.01 0.58 5.29 84.96 0.45 1.03 14 6 N -0.90 -51.82 13.95 21.68 0.30 -51.51 14 7 Si 0.95 38.82 24.35 68.60 1.67 40.49 14 8 H -0.22 -7.48 6.50 99.48 0.65 -6.83 14 9 H -0.28 -11.64 7.11 99.48 0.71 -10.93 14 10 H -0.26 -10.21 6.75 99.48 0.67 -9.54 14 11 C 0.52 25.16 7.60 86.53 0.66 25.81 14 12 O -0.61 -34.90 16.79 -4.26 -0.07 -34.98 14 13 C -0.27 -9.88 6.55 24.62 0.16 -9.72 14 14 C -0.13 -3.88 10.41 22.17 0.23 -3.65 14 15 C 0.07 1.78 11.14 84.86 0.95 2.72 14 16 N -0.56 -15.34 11.29 -85.36 -0.96 -16.31 14 17 S 0.44 12.40 18.48 -56.49 -1.04 11.36 14 18 H 0.10 3.53 4.05 -2.39 -0.01 3.52 14 19 H 0.08 2.59 6.00 -2.41 -0.01 2.57 14 20 H 0.10 2.83 6.36 -6.00 -0.04 2.80 14 21 H 0.29 14.89 8.31 -92.70 -0.77 14.12 14 22 H 0.18 4.93 8.06 -2.91 -0.02 4.91 14 23 H 0.22 3.29 8.06 -2.91 -0.02 3.27 14 Total: -1.00 -71.34 213.60 3.29 -68.06 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.12 Total: 7.65 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.07 Total: -0.72 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -2.46 Total: -91.86 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.07 Total: -34.98 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.67 Total: 40.49 kcal Atomic # 16 Polarization: 12.40 SS G_CDS: -1.04 Total: 11.36 kcal Total: -71.34 3.29 -68.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705399651.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.662 kcal (2) G-P(sol) polarization free energy of solvation -71.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds