Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48493 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46967 * 300.00179 * 3 2 1 6 6 H 1.48502 * 109.46813 * 60.00289 * 3 2 1 7 7 C 1.38815 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99343 * 162.51255 * 7 2 1 9 9 N 1.36931 * 120.00245 * 342.50476 * 7 2 1 10 10 C 1.46830 * 120.12394 * 330.64358 * 9 7 2 11 11 C 1.53723 * 109.04401 * 236.31304 * 10 9 7 12 12 N 1.46953 * 107.38098 * 313.87634 * 11 10 9 13 13 C 1.33391 * 128.36414 * 233.41415 * 12 11 10 14 14 O 1.21509 * 123.19440 * 350.43518 * 13 12 11 15 15 O 1.33993 * 113.60993 * 170.43380 * 13 12 11 16 16 C 1.45831 * 109.46879 * 3.86478 * 15 13 12 17 17 C 1.47892 * 122.82644 * 51.96884 * 12 11 10 18 18 H 1.09002 * 111.64830 * 68.98056 * 17 12 11 19 19 C 1.47092 * 120.12519 * 150.65557 * 9 7 2 20 20 H 0.96996 * 120.00444 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.54195 * 116.43919 * 10 9 7 22 22 H 1.08998 * 109.61111 * 356.22282 * 10 9 7 23 23 H 1.08995 * 109.87457 * 194.40950 * 11 10 9 24 24 H 1.09006 * 109.93618 * 73.37675 * 11 10 9 25 25 H 1.08996 * 110.52252 * 120.62598 * 16 15 13 26 26 H 1.08999 * 110.52596 * 243.36725 * 16 15 13 27 27 H 1.09006 * 109.74636 * 242.22941 * 19 9 7 28 28 H 1.09003 * 109.74272 * 2.94244 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0528 -1.2235 -0.2816 9 7 1.3731 -2.3608 0.3554 10 6 0.2559 -2.3248 1.3075 11 6 0.5723 -3.2577 2.4877 12 7 1.0733 -4.5203 1.9271 13 6 0.6394 -5.7598 2.1608 14 8 -0.1624 -6.0306 3.0327 15 8 1.1715 -6.6779 1.3427 16 6 2.1594 -6.0437 0.4775 17 6 2.1772 -4.5792 0.9447 18 1 3.1302 -4.2986 1.3933 19 6 1.8055 -3.6461 -0.2143 20 1 -0.4850 0.8400 0.0004 21 1 -0.6558 -2.6594 0.8126 22 1 0.1197 -1.3072 1.6735 23 1 -0.3323 -3.4425 3.0668 24 1 1.3339 -2.8068 3.1240 25 1 3.1389 -6.5011 0.6164 26 1 1.8510 -6.1082 -0.5660 27 1 0.9927 -4.0842 -0.7936 28 1 2.6735 -3.4914 -0.8552 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763458598.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -35.932654 kcal Electronic energy + Delta-G solvation = -14663.316267 eV Core-core repulsion = 12101.778996 eV Total energy + Delta-G solvation = -2561.537271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.23091 -37.02300 -36.68312 -33.89919 -31.63011 -30.89921 -27.94316 -25.75475 -23.66187 -22.50483 -21.25644 -19.68329 -17.17750 -16.85333 -16.42941 -15.80134 -15.07295 -14.59767 -14.08385 -13.68842 -13.40853 -13.33533 -13.03749 -12.92634 -11.73079 -11.40285 -11.08188 -10.93670 -10.69681 -10.46400 -10.37432 -10.23923 -10.07576 -9.89615 -8.74079 -8.48071 -6.87604 -5.98095 -3.45698 2.93892 3.15653 3.27051 3.35552 3.37099 3.86072 4.28745 4.55244 4.94838 5.05571 5.19922 5.42533 5.44231 5.65891 5.74488 6.06721 6.16678 6.21103 6.36983 6.50077 6.80931 7.08522 7.39189 7.61770 7.82885 8.22874 8.47805 8.98149 9.59911 10.14670 11.09420 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.058372 B = 0.009278 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.563652 B = 3017.237925 C = 3288.102612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.154 3.846 11 C 0.120 3.880 12 N -0.611 5.611 13 C 0.640 3.360 14 O -0.543 6.543 15 O -0.340 6.340 16 C 0.046 3.954 17 C 0.068 3.932 18 H 0.100 0.900 19 C 0.141 3.859 20 H 0.257 0.743 21 H 0.028 0.972 22 H 0.105 0.895 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.032 0.968 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -6.277 0.332 8.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.310 5.310 10 C 0.028 3.972 11 C -0.001 4.001 12 N -0.358 5.358 13 C 0.394 3.606 14 O -0.430 6.430 15 O -0.250 6.250 16 C -0.029 4.029 17 C -0.039 4.039 18 H 0.118 0.882 19 C 0.013 3.987 20 H 0.067 0.933 21 H 0.046 0.954 22 H 0.123 0.877 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.049 0.951 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.648 -6.467 0.763 8.001 hybrid contribution 0.499 0.990 -0.110 1.114 sum 5.147 -5.477 0.653 7.544 Atomic orbital electron populations 1.70023 1.05410 1.25955 1.52697 1.25127 0.95298 0.98758 1.00034 0.86184 0.79375 0.83491 0.77440 1.20109 1.21555 1.21334 1.19235 0.92901 0.84580 1.42752 0.91293 1.43957 1.37903 1.01628 1.47490 1.21315 0.89369 0.99011 0.87538 1.22551 0.98711 0.80793 0.98087 1.48262 1.35928 1.06212 1.45378 1.18328 0.80731 0.80208 0.81336 1.90974 1.36820 1.82389 1.32840 1.87267 1.54131 1.35233 1.48397 1.24261 0.92077 0.91414 0.95164 1.23395 0.92012 0.95186 0.93284 0.88215 1.21373 0.98633 0.87282 0.91427 0.93288 0.95434 0.87691 0.90056 0.91499 0.88142 0.87920 0.95061 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 11.23 55.49 0.62 -23.98 15 2 C 0.01 0.19 4.88 -17.43 -0.09 0.11 15 3 Si 0.91 20.34 29.59 -169.99 -5.03 15.31 15 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.27 -6.70 9.52 -15.06 -0.14 -6.84 15 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 15 9 N -0.59 -13.56 2.93 -171.83 -0.50 -14.07 15 10 C 0.15 3.48 5.52 -3.49 -0.02 3.46 15 11 C 0.12 2.32 7.10 -3.42 -0.02 2.29 15 12 N -0.61 -11.48 2.98 -169.99 -0.51 -11.99 15 13 C 0.64 12.79 8.88 53.44 0.47 13.26 15 14 O -0.54 -12.54 17.64 -19.09 -0.34 -12.87 15 15 O -0.34 -5.87 11.10 -38.39 -0.43 -6.30 15 16 C 0.05 0.59 7.83 37.54 0.29 0.88 15 17 C 0.07 1.06 4.15 -66.60 -0.28 0.79 15 18 H 0.10 1.46 8.14 -51.93 -0.42 1.04 15 19 C 0.14 2.59 5.95 -3.53 -0.02 2.56 15 20 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.11 2.60 5.96 -51.93 -0.31 2.29 15 23 H 0.08 1.52 7.87 -51.93 -0.41 1.11 15 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.10 1.12 7.55 -51.93 -0.39 0.73 15 27 H 0.03 0.60 7.84 -51.93 -0.41 0.19 15 28 H 0.07 1.23 7.92 -51.93 -0.41 0.82 15 LS Contribution 236.51 15.07 3.56 3.56 Total: -1.00 -30.65 236.51 -5.58 -36.23 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.17 Total: -2.42 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 0.20 Total: 16.52 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.39 Total: -50.03 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.76 Total: -19.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.65 -5.58 -36.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763458598.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.301 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds