Wall clock time and date at job start Sun Mar 29 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48493 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46967 * 300.00179 * 3 2 1 6 6 H 1.48502 * 109.46813 * 60.00289 * 3 2 1 7 7 C 1.38815 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99343 * 162.51255 * 7 2 1 9 9 N 1.36931 * 120.00245 * 342.50476 * 7 2 1 10 10 C 1.46830 * 120.12394 * 330.64358 * 9 7 2 11 11 C 1.53723 * 109.04401 * 236.31304 * 10 9 7 12 12 N 1.46953 * 107.38098 * 313.87634 * 11 10 9 13 13 C 1.33391 * 128.36414 * 233.41415 * 12 11 10 14 14 O 1.21509 * 123.19440 * 350.43518 * 13 12 11 15 15 O 1.33993 * 113.60993 * 170.43380 * 13 12 11 16 16 C 1.45831 * 109.46879 * 3.86478 * 15 13 12 17 17 C 1.47892 * 122.82644 * 51.96884 * 12 11 10 18 18 H 1.09002 * 111.64830 * 68.98056 * 17 12 11 19 19 C 1.47092 * 120.12519 * 150.65557 * 9 7 2 20 20 H 0.96996 * 120.00444 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.54195 * 116.43919 * 10 9 7 22 22 H 1.08998 * 109.61111 * 356.22282 * 10 9 7 23 23 H 1.08995 * 109.87457 * 194.40950 * 11 10 9 24 24 H 1.09006 * 109.93618 * 73.37675 * 11 10 9 25 25 H 1.08996 * 110.52252 * 120.62598 * 16 15 13 26 26 H 1.08999 * 110.52596 * 243.36725 * 16 15 13 27 27 H 1.09006 * 109.74636 * 242.22941 * 19 9 7 28 28 H 1.09003 * 109.74272 * 2.94244 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0528 -1.2235 -0.2816 9 7 1.3731 -2.3608 0.3554 10 6 0.2559 -2.3248 1.3075 11 6 0.5723 -3.2577 2.4877 12 7 1.0733 -4.5203 1.9271 13 6 0.6394 -5.7598 2.1608 14 8 -0.1624 -6.0306 3.0327 15 8 1.1715 -6.6779 1.3427 16 6 2.1594 -6.0437 0.4775 17 6 2.1772 -4.5792 0.9447 18 1 3.1302 -4.2986 1.3933 19 6 1.8055 -3.6461 -0.2143 20 1 -0.4850 0.8400 0.0004 21 1 -0.6558 -2.6594 0.8126 22 1 0.1197 -1.3072 1.6735 23 1 -0.3323 -3.4425 3.0668 24 1 1.3339 -2.8068 3.1240 25 1 3.1389 -6.5011 0.6164 26 1 1.8510 -6.1082 -0.5660 27 1 0.9927 -4.0842 -0.7936 28 1 2.6735 -3.4914 -0.8552 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763458598.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:26 Heat of formation + Delta-G solvation = -56.963865 kcal Electronic energy + Delta-G solvation = -14664.228249 eV Core-core repulsion = 12101.778996 eV Total energy + Delta-G solvation = -2562.449253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.64562 -38.65735 -38.20977 -35.58517 -33.25107 -32.58845 -29.50228 -27.31065 -25.35383 -24.02448 -22.74862 -21.29020 -18.84992 -18.26398 -17.97421 -17.28459 -16.88495 -16.08691 -15.74659 -15.28008 -14.98084 -14.84670 -14.52578 -14.36193 -13.29987 -13.16849 -12.75215 -12.62320 -12.29777 -12.12911 -12.03897 -11.83742 -11.62794 -11.55506 -10.62949 -10.08009 -8.72482 -7.91504 -5.41613 1.47614 1.49086 1.53135 1.62060 1.64896 2.48467 2.62443 3.22437 3.28013 3.63617 3.82544 3.86508 4.24972 4.41774 4.45034 4.54494 4.64475 4.76296 4.93743 5.00915 5.20397 5.37493 5.58801 5.65982 6.33302 6.40093 6.94104 7.07122 7.74827 8.26385 9.14441 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.058372 B = 0.009278 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.563652 B = 3017.237925 C = 3288.102612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.606 5.606 10 C 0.165 3.835 11 C 0.133 3.867 12 N -0.616 5.616 13 C 0.640 3.360 14 O -0.583 6.583 15 O -0.344 6.344 16 C 0.051 3.949 17 C 0.074 3.926 18 H 0.120 0.880 19 C 0.137 3.863 20 H 0.252 0.748 21 H -0.002 1.002 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.124 0.876 27 H 0.024 0.976 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 -7.177 -0.056 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.395 4.395 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.038 3.962 11 C 0.011 3.989 12 N -0.362 5.362 13 C 0.395 3.605 14 O -0.473 6.473 15 O -0.254 6.254 16 C -0.023 4.023 17 C -0.031 4.031 18 H 0.138 0.862 19 C 0.011 3.989 20 H 0.061 0.939 21 H 0.016 0.984 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.042 0.958 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.899 -7.402 0.347 10.125 hybrid contribution -0.147 1.217 -0.074 1.228 sum 6.751 -6.186 0.274 9.161 Atomic orbital electron populations 1.70169 1.06900 1.26144 1.54779 1.25853 0.95892 1.01754 1.00684 0.85205 0.78893 0.79730 0.76535 1.18583 1.22331 1.21930 1.19608 0.93384 0.85425 1.41119 0.90317 1.44202 1.37696 1.02880 1.48106 1.21018 0.88578 0.98203 0.88438 1.22271 0.99349 0.80621 0.96660 1.48315 1.36495 1.05579 1.45778 1.18393 0.80293 0.80624 0.81224 1.90935 1.38551 1.83112 1.34722 1.87257 1.54988 1.34832 1.48354 1.24683 0.93298 0.89029 0.95337 1.23522 0.91618 0.96648 0.91355 0.86218 1.21566 0.99016 0.85681 0.92655 0.93923 0.98352 0.90289 0.90001 0.90182 0.83500 0.85791 0.95771 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.34 11.23 21.65 0.24 -52.10 15 2 C -0.05 -2.38 4.88 84.86 0.41 -1.96 15 3 Si 0.97 41.71 29.59 68.60 2.03 43.74 15 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 5 H -0.30 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.29 -12.74 7.11 99.48 0.71 -12.04 15 7 C -0.27 -13.11 9.52 84.04 0.80 -12.31 15 8 H 0.08 3.67 7.89 -2.91 -0.02 3.65 15 9 N -0.61 -27.44 2.93 -697.55 -2.04 -29.48 15 10 C 0.16 7.53 5.52 86.56 0.48 8.01 15 11 C 0.13 5.07 7.10 86.54 0.61 5.68 15 12 N -0.62 -22.03 2.98 -923.98 -2.76 -24.79 15 13 C 0.64 24.59 8.88 130.01 1.15 25.74 15 14 O -0.58 -26.70 17.64 19.63 0.35 -26.35 15 15 O -0.34 -10.90 11.10 -49.40 -0.55 -11.45 15 16 C 0.05 1.06 7.83 72.23 0.57 1.62 15 17 C 0.07 2.06 4.15 45.09 0.19 2.25 15 18 H 0.12 2.96 8.14 -2.39 -0.02 2.95 15 19 C 0.14 4.71 5.95 86.39 0.51 5.23 15 20 H 0.25 13.72 8.31 -92.71 -0.77 12.95 15 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 22 H 0.08 4.04 5.96 -2.39 -0.01 4.02 15 23 H 0.08 3.09 7.87 -2.39 -0.02 3.07 15 24 H 0.08 2.85 8.14 -2.38 -0.02 2.83 15 25 H 0.15 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.12 2.12 7.55 -2.39 -0.02 2.11 15 27 H 0.02 0.88 7.84 -2.38 -0.02 0.86 15 28 H 0.09 2.82 7.92 -2.39 -0.02 2.80 15 Total: -1.00 -66.55 236.51 3.16 -63.39 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.16 Total: 2.79 kcal Atomic # 6 Polarization: 29.53 SS G_CDS: 4.73 Total: 34.25 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.56 Total: -106.37 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.20 Total: -37.80 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -66.55 3.16 -63.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763458598.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.425 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds