Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48494 * 109.47522 * 92.93666 * 3 2 1 5 5 H 1.48501 * 109.46991 * 212.94233 * 3 2 1 6 6 H 1.48503 * 109.46841 * 332.93441 * 3 2 1 7 7 C 1.38815 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 19.04854 * 7 2 1 9 9 N 1.36933 * 120.00090 * 199.04462 * 7 2 1 10 10 C 1.46819 * 120.12471 * 30.68252 * 9 7 2 11 11 C 1.53722 * 109.05412 * 123.71637 * 10 9 7 12 12 N 1.46955 * 107.38283 * 46.10450 * 11 10 9 13 13 C 1.33400 * 128.36434 * 126.62083 * 12 11 10 14 14 O 1.21514 * 123.19384 * 9.52377 * 13 12 11 15 15 O 1.33980 * 113.60693 * 189.54795 * 13 12 11 16 16 C 1.45837 * 109.47431 * 356.14109 * 15 13 12 17 17 C 1.47883 * 122.82521 * 308.04584 * 12 11 10 18 18 H 1.08997 * 111.65223 * 290.07881 * 17 12 11 19 19 C 1.47097 * 120.12395 * 210.40952 * 9 7 2 20 20 H 0.97004 * 120.00118 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.53864 * 243.58559 * 10 9 7 22 22 H 1.08994 * 109.54372 * 3.83803 * 10 9 7 23 23 H 1.08998 * 109.87555 * 165.57474 * 11 10 9 24 24 H 1.09004 * 109.87121 * 286.56805 * 11 10 9 25 25 H 1.09002 * 110.52485 * 116.61972 * 16 15 13 26 26 H 1.08999 * 110.52508 * 239.22715 * 16 15 13 27 27 H 1.09000 * 109.74861 * 357.04615 * 19 9 7 28 28 H 1.09001 * 109.74443 * 117.75790 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5599 2.0106 1.3981 5 1 3.5153 1.4588 -0.7614 6 1 1.4180 2.6698 -0.6371 7 6 2.0102 -1.2022 0.0005 8 1 1.5145 -2.1120 -0.3043 9 7 3.3233 -1.2345 0.3875 10 6 3.8210 -0.2801 1.3860 11 6 4.4475 -1.0576 2.5548 12 7 5.3109 -2.0974 1.9777 13 6 6.5970 -2.3420 2.2341 14 8 7.2076 -1.8100 3.1400 15 8 7.1514 -3.2296 1.3975 16 6 6.1330 -3.7431 0.4887 17 6 4.8402 -3.0506 0.9497 18 1 4.1273 -3.7655 1.3604 19 6 4.2392 -2.2295 -0.1912 20 1 -0.4850 0.8401 0.0004 21 1 4.5738 0.3639 0.9313 22 1 2.9940 0.3272 1.7538 23 1 5.0413 -0.3836 3.1723 24 1 3.6635 -1.5173 3.1566 25 1 6.3666 -3.4704 -0.5405 26 1 6.0449 -4.8252 0.5857 27 1 3.6906 -2.8866 -0.8660 28 1 5.0360 -1.7234 -0.7363 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763458599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -52.556905 kcal Electronic energy + Delta-G solvation = -14740.575144 eV Core-core repulsion = 12178.316991 eV Total energy + Delta-G solvation = -2562.258153 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.70754 -38.86372 -38.27859 -35.63417 -33.51285 -33.03438 -29.63774 -27.57197 -25.35026 -24.17286 -22.81625 -21.49126 -18.95764 -18.38854 -18.02184 -17.37548 -17.15848 -16.25474 -16.01548 -15.49812 -14.97084 -14.79038 -14.63931 -14.35935 -14.06514 -13.54553 -12.95371 -12.69102 -12.37525 -12.10001 -11.98350 -11.68878 -11.64209 -11.59999 -10.88906 -10.12287 -8.93918 -8.19792 -5.57852 1.28410 1.39389 1.44231 1.49813 1.60572 2.37968 2.55772 2.95480 3.15258 3.50745 3.65703 3.79616 4.14943 4.18547 4.24772 4.49851 4.56445 4.65355 4.71822 4.83772 4.89246 5.06523 5.40647 5.83054 6.11000 6.35261 6.82434 6.91174 7.53546 7.92565 8.99061 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.049824 B = 0.010770 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.842398 B = 2599.123764 C = 2888.780826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.023 4.023 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.311 1.311 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.616 5.616 10 C 0.106 3.894 11 C 0.138 3.862 12 N -0.618 5.618 13 C 0.643 3.357 14 O -0.579 6.579 15 O -0.342 6.342 16 C 0.050 3.950 17 C 0.073 3.927 18 H 0.116 0.884 19 C 0.139 3.861 20 H 0.263 0.737 21 H 0.033 0.967 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.129 0.871 26 H 0.145 0.855 27 H 0.095 0.905 28 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.682 -6.484 -0.038 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.219 4.219 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.240 1.240 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.340 5.340 10 C -0.020 4.020 11 C 0.015 3.985 12 N -0.364 5.364 13 C 0.398 3.602 14 O -0.469 6.469 15 O -0.252 6.252 16 C -0.024 4.024 17 C -0.031 4.031 18 H 0.134 0.866 19 C 0.014 3.986 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.147 0.853 26 H 0.163 0.837 27 H 0.114 0.886 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.085 -6.189 0.386 11.839 hybrid contribution -0.277 1.106 -0.057 1.141 sum 9.808 -5.083 0.329 11.052 Atomic orbital electron populations 1.69924 1.07291 1.27361 1.54867 1.25896 0.95679 1.00644 0.99714 0.86118 0.78294 0.80806 0.78173 1.19413 1.19459 1.23954 1.18868 0.85505 0.93630 1.40257 0.91759 1.44353 1.07156 1.37796 1.44710 1.21879 0.97542 0.92480 0.90055 1.22081 0.92389 0.88445 0.95543 1.48247 1.09814 1.35063 1.43288 1.18352 0.81486 0.78820 0.81541 1.90953 1.67536 1.55916 1.32497 1.87274 1.37059 1.55290 1.45596 1.24703 0.81586 1.01685 0.94381 1.23398 0.97771 0.91705 0.90275 0.86615 1.21525 0.93065 0.91047 0.92983 0.92782 0.94870 0.90750 0.88795 0.89917 0.85324 0.83716 0.88625 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.10 13.97 21.65 0.30 -55.80 15 2 C -0.02 -1.27 5.23 84.86 0.44 -0.82 15 3 Si 0.94 43.71 24.41 68.60 1.67 45.39 15 4 H -0.27 -11.66 6.40 99.48 0.64 -11.02 15 5 H -0.27 -12.31 7.01 99.48 0.70 -11.61 15 6 H -0.31 -14.96 7.11 99.48 0.71 -14.25 15 7 C -0.25 -12.93 9.97 84.03 0.84 -12.09 15 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 15 9 N -0.62 -25.72 2.68 -698.52 -1.87 -27.59 15 10 C 0.11 4.20 4.38 86.56 0.38 4.57 15 11 C 0.14 4.65 7.10 86.54 0.61 5.27 15 12 N -0.62 -19.92 2.98 -924.91 -2.76 -22.68 15 13 C 0.64 22.48 8.88 130.00 1.15 23.63 15 14 O -0.58 -24.49 17.64 19.62 0.35 -24.15 15 15 O -0.34 -9.83 11.10 -49.28 -0.55 -10.37 15 16 C 0.05 0.93 7.83 72.23 0.57 1.49 15 17 C 0.07 1.87 4.13 44.93 0.19 2.06 15 18 H 0.12 2.74 8.14 -2.39 -0.02 2.72 15 19 C 0.14 4.31 5.93 86.22 0.51 4.82 15 20 H 0.26 14.89 8.31 -92.70 -0.77 14.12 15 21 H 0.03 1.32 7.37 -2.39 -0.02 1.30 15 22 H 0.07 3.19 4.38 -2.39 -0.01 3.18 15 23 H 0.09 3.02 7.87 -2.39 -0.02 3.01 15 24 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.13 1.79 7.55 -2.39 -0.02 1.77 15 26 H 0.15 1.57 8.14 -2.39 -0.02 1.55 15 27 H 0.10 2.72 7.92 -2.39 -0.02 2.70 15 28 H 0.04 1.34 7.82 -2.39 -0.02 1.32 15 Total: -1.00 -68.22 230.43 2.92 -65.30 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: 1.09 Total: 0.98 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 4.69 Total: 28.94 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.33 Total: -106.07 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.20 Total: -34.52 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.67 Total: 45.39 kcal Total: -68.22 2.92 -65.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763458599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.739 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds