Wall clock time and date at job start Sun Mar 29 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86789 * 120.00217 * 2 1 4 4 H 1.48498 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47659 * 300.00550 * 3 2 1 6 6 H 1.48504 * 109.47063 * 60.00547 * 3 2 1 7 7 C 1.40055 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99881 * 359.97438 * 7 2 1 10 10 O 1.21691 * 120.00342 * 359.97438 * 9 7 2 11 11 N 1.34774 * 119.99951 * 180.02562 * 9 7 2 12 12 N 1.40097 * 120.00136 * 179.97438 * 11 9 7 13 13 C 1.34784 * 120.00130 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72966 * 13 12 11 16 16 C 1.53003 * 109.46624 * 180.02562 * 15 13 12 17 17 C 1.53001 * 117.49357 * 243.61573 * 16 15 13 18 18 C 1.53000 * 60.00133 * 252.51334 * 17 16 15 19 19 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 20 20 H 0.97005 * 119.99841 * 359.97438 * 11 9 7 21 21 H 0.97005 * 120.00024 * 0.02562 * 12 11 9 22 22 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 23 23 H 1.08993 * 109.47525 * 59.99679 * 15 13 12 24 24 H 1.08991 * 115.55733 * 29.32606 * 16 15 13 25 25 H 1.08999 * 117.50515 * 0.02562 * 17 16 15 26 26 H 1.09002 * 117.49548 * 145.02038 * 17 16 15 27 27 H 1.09005 * 117.49472 * 252.51172 * 18 17 16 28 28 H 1.08993 * 117.49965 * 107.49310 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2123 6 1 1.8821 2.3963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 7 1.2484 -4.8610 0.0000 13 6 1.9223 -6.0283 0.0005 14 8 3.1351 -6.0283 0.0010 15 6 1.1687 -7.3333 0.0073 16 6 2.1630 -8.4962 0.0071 17 6 2.1591 -9.4287 -1.2059 18 6 1.5948 -9.9114 0.1318 19 1 -0.4849 0.8401 0.0004 20 1 2.9190 -3.6477 -0.0009 21 1 0.2784 -4.8610 0.0000 22 1 0.5458 -7.3885 0.9001 23 1 0.5384 -7.3935 -0.8799 24 1 3.1219 -8.2951 0.4845 25 1 1.4486 -9.2135 -2.0040 26 1 3.1157 -9.8410 -1.5268 27 1 2.1803 -10.6413 0.6910 28 1 0.5128 -10.0139 0.2141 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819118103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:11 Heat of formation + Delta-G solvation = -54.195428 kcal Electronic energy + Delta-G solvation = -13429.446619 eV Core-core repulsion = 10867.117414 eV Total energy + Delta-G solvation = -2562.329205 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98049 -39.25880 -37.89242 -35.89007 -34.63567 -32.48462 -30.00462 -28.01588 -23.21998 -22.96350 -22.33014 -21.12704 -19.46366 -18.37630 -17.97278 -17.17882 -16.62123 -16.18527 -15.69728 -14.98136 -14.86763 -14.72985 -14.46971 -13.50760 -13.29067 -12.84743 -12.75115 -12.39766 -12.29124 -12.00814 -11.91456 -11.30241 -11.10688 -10.98417 -10.81513 -10.11891 -8.98814 -8.40864 -6.96318 1.30029 1.39058 1.46029 1.58434 1.61911 2.26863 2.37922 2.92677 3.42595 3.49697 3.76495 3.97862 4.08815 4.20210 4.53993 4.66212 4.75856 4.83797 5.07131 5.25529 5.30762 5.37194 5.49800 5.97544 6.18431 6.38735 6.75882 7.26094 7.27687 8.31851 8.54592 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.091066 B = 0.005456 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.396173 B = 5130.382122 C = 5351.742356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.033 3.967 3 Si 1.005 2.995 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.541 3.459 10 O -0.621 6.621 11 N -0.563 5.563 12 N -0.517 5.517 13 C 0.502 3.498 14 O -0.593 6.593 15 C -0.089 4.089 16 C -0.162 4.162 17 C -0.183 4.183 18 C -0.158 4.158 19 H 0.280 0.720 20 H 0.417 0.583 21 H 0.427 0.573 22 H 0.123 0.877 23 H 0.118 0.882 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -12.643 -0.361 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.824 3.176 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.599 4.599 8 H 0.109 0.891 9 C 0.347 3.653 10 O -0.507 6.507 11 N -0.314 5.314 12 N -0.261 5.261 13 C 0.290 3.710 14 O -0.473 6.473 15 C -0.130 4.130 16 C -0.181 4.181 17 C -0.220 4.220 18 C -0.195 4.195 19 H 0.090 0.910 20 H 0.256 0.744 21 H 0.268 0.732 22 H 0.140 0.860 23 H 0.137 0.863 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.795 -12.564 -0.361 12.696 hybrid contribution 0.280 0.771 -0.010 0.820 sum 2.074 -11.792 -0.372 11.979 Atomic orbital electron populations 1.70147 1.09393 1.29479 1.35159 1.26968 0.95670 1.04755 0.91002 0.84857 0.79165 0.74849 0.78772 1.17237 1.19040 1.19027 1.21269 0.94978 0.88775 1.54864 0.89131 1.18880 0.87308 0.82302 0.76814 1.90560 1.15271 1.86889 1.57939 1.45421 1.07810 0.95837 1.82367 1.45023 1.09329 0.97794 1.73981 1.21639 0.88443 0.84905 0.76037 1.90632 1.15611 1.87758 1.53296 1.21191 0.97902 0.87146 1.06754 1.21947 1.00366 0.90622 1.05165 1.23153 1.03360 1.03371 0.92074 1.23106 1.02082 0.94822 0.99464 0.91025 0.74365 0.73169 0.85951 0.86348 0.88877 0.87857 0.88801 0.87811 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.79 11.83 21.84 0.26 -47.53 15 2 C 0.03 1.76 5.50 85.31 0.47 2.23 15 3 Si 1.00 39.78 29.56 68.60 2.03 41.81 15 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 5 H -0.27 -10.06 7.11 99.48 0.71 -9.36 15 6 H -0.27 -10.06 7.11 99.48 0.71 -9.35 15 7 C -0.56 -31.36 9.54 24.83 0.24 -31.13 15 8 H 0.09 4.60 7.85 -2.92 -0.02 4.58 15 9 C 0.54 31.05 7.86 86.36 0.68 31.73 15 10 O -0.62 -39.58 14.86 -4.32 -0.06 -39.65 15 11 N -0.56 -27.18 6.25 -176.63 -1.10 -28.28 15 12 N -0.52 -20.79 6.26 -173.52 -1.09 -21.88 15 13 C 0.50 17.57 7.95 87.65 0.70 18.26 15 14 O -0.59 -24.84 15.40 -3.04 -0.05 -24.89 15 15 C -0.09 -2.05 5.98 29.85 0.18 -1.87 15 16 C -0.16 -3.67 5.42 -10.79 -0.06 -3.73 15 17 C -0.18 -3.40 10.18 30.59 0.31 -3.09 15 18 C -0.16 -2.50 10.25 30.60 0.31 -2.18 15 19 H 0.28 14.72 8.29 -92.71 -0.77 13.95 15 20 H 0.42 19.23 7.98 -213.32 -1.70 17.53 15 21 H 0.43 16.28 8.00 -213.32 -1.71 14.57 15 22 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.12 2.19 7.88 -2.39 -0.02 2.17 15 24 H 0.09 2.60 7.30 -2.39 -0.02 2.59 15 25 H 0.10 1.72 8.03 -2.39 -0.02 1.70 15 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 27 H 0.10 1.45 8.14 -2.38 -0.02 1.43 15 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 Total: -1.00 -74.26 256.05 0.60 -73.66 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: -2.21 Total: 36.54 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 2.83 Total: 10.22 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -1.93 Total: -97.69 kcal Atomic # 8 Polarization: -64.43 SS G_CDS: -0.11 Total: -64.54 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -74.26 0.60 -73.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819118103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -74.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds