Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.27643 * 125.76914 * 2 1 4 4 O 1.41383 * 113.17065 * 179.65461 * 3 2 1 5 5 C 1.44250 * 107.50340 * 17.36626 * 4 3 2 6 6 H 1.08998 * 111.00932 * 92.96344 * 5 4 3 7 7 C 1.50704 * 111.00918 * 216.78725 * 5 4 3 8 8 O 1.21288 * 120.00545 * 0.40403 * 7 5 4 9 9 N 1.34783 * 119.99911 * 180.40281 * 7 5 4 10 10 C 1.46499 * 119.99926 * 0.02562 * 9 7 5 11 11 C 1.37093 * 120.00022 * 180.02562 * 9 7 5 12 12 H 1.07993 * 120.00010 * 25.55910 * 11 9 7 13 13 C 1.38949 * 119.99701 * 205.56040 * 11 9 7 14 14 N 1.31408 * 120.00345 * 11.32084 * 13 11 9 15 15 Si 1.86807 * 119.99641 * 191.32353 * 13 11 9 16 16 H 1.48498 * 109.47338 * 90.00119 * 15 13 11 17 17 H 1.48502 * 109.46875 * 210.00174 * 15 13 11 18 18 H 1.48506 * 109.47117 * 329.99664 * 15 13 11 19 19 C 1.51681 * 125.76552 * 179.97438 * 2 1 3 20 20 H 1.09009 * 109.46715 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47327 * 119.97869 * 1 2 3 22 22 H 1.09000 * 109.47859 * 239.98130 * 1 2 3 23 23 H 1.09007 * 109.47375 * 84.86244 * 10 9 7 24 24 H 1.09001 * 109.47084 * 204.86403 * 10 9 7 25 25 H 1.08999 * 109.47471 * 324.86434 * 10 9 7 26 26 H 0.97000 * 119.99990 * 180.02562 * 14 13 11 27 27 H 1.09004 * 110.80785 * 46.49852 * 19 2 1 28 28 H 1.09003 * 110.81088 * 282.99138 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7273 0.0078 5 6 3.7719 -0.6502 -0.3973 6 1 3.9326 -0.7269 -1.4726 7 6 4.8838 -1.3270 0.3620 8 8 5.5158 -0.7083 1.1920 9 7 5.1762 -2.6201 0.1187 10 6 4.4133 -3.3674 -0.8842 11 6 6.1874 -3.2360 0.8098 12 1 6.4705 -2.8758 1.7877 13 6 6.8478 -4.3238 0.2519 14 7 6.6644 -4.6254 -1.0138 15 14 7.9967 -5.3575 1.3014 16 1 7.2310 -6.4623 1.9326 17 1 9.0712 -5.9246 0.4476 18 1 8.6012 -4.5072 2.3583 19 6 2.3935 -1.2308 0.0006 20 1 -0.3633 1.0278 0.0005 21 1 -0.3634 -0.5135 -0.8901 22 1 -0.3635 -0.5141 0.8898 23 1 4.8407 -3.1913 -1.8713 24 1 4.4561 -4.4320 -0.6542 25 1 3.3753 -3.0348 -0.8732 26 1 7.1252 -5.3850 -1.4031 27 1 2.0507 -1.9552 -0.7382 28 1 2.4340 -1.6784 0.9936 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824855436.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = -26.384682 kcal Electronic energy + Delta-G solvation = -14252.473673 eV Core-core repulsion = 11691.350433 eV Total energy + Delta-G solvation = -2561.123240 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.62223 -39.74884 -36.80809 -34.81440 -33.93583 -31.86143 -29.24799 -28.18046 -27.00270 -24.81282 -21.47114 -20.39355 -19.05621 -18.32557 -17.26464 -17.22430 -16.50021 -16.02475 -15.67967 -15.18193 -14.54927 -14.13425 -13.94700 -13.67291 -13.51593 -13.32796 -13.20238 -12.93834 -12.70087 -12.48565 -12.44911 -12.15853 -11.57829 -11.05797 -10.80937 -10.27726 -9.76295 -8.41552 -6.09438 0.84393 1.33756 1.39763 1.51275 1.72615 1.89620 2.28461 2.90870 2.99283 3.11203 3.43668 3.61257 3.80270 4.02508 4.28177 4.55697 4.66096 4.74837 4.82405 4.87414 4.96899 5.31304 5.33819 5.38461 6.00291 6.31614 6.43902 7.06143 7.30319 7.86881 8.61400 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.059346 B = 0.008100 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.697205 B = 3456.005188 C = 3663.630998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.107 3.893 3 N -0.337 5.337 4 O -0.227 6.227 5 C 0.037 3.963 6 H 0.114 0.886 7 C 0.435 3.565 8 O -0.627 6.627 9 N -0.445 5.445 10 C 0.107 3.893 11 C -0.350 4.350 12 H 0.069 0.931 13 C 0.005 3.995 14 N -0.891 5.891 15 Si 0.993 3.007 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.280 1.280 19 C -0.138 4.138 20 H 0.085 0.915 21 H 0.123 0.877 22 H 0.113 0.887 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.277 0.723 27 H 0.154 0.846 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 -1.424 -2.712 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 N -0.083 5.083 4 O -0.240 6.240 5 C -0.025 4.025 6 H 0.131 0.869 7 C 0.222 3.778 8 O -0.514 6.514 9 N -0.164 5.164 10 C -0.035 4.035 11 C -0.478 4.478 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.528 5.528 15 Si 0.816 3.184 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.205 1.205 19 C -0.178 4.178 20 H 0.104 0.896 21 H 0.141 0.859 22 H 0.131 0.869 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.171 0.829 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.376 -0.092 -2.423 13.594 hybrid contribution 1.319 -1.182 0.343 1.804 sum -12.057 -1.275 -2.080 12.301 Atomic orbital electron populations 1.20742 0.80832 1.05679 1.06662 1.27164 1.00099 0.90790 0.90483 1.77855 0.88290 1.25097 1.17099 1.91320 1.17529 1.26463 1.88725 1.23436 0.95883 0.83475 0.99729 0.86887 1.20471 0.87831 0.82373 0.87082 1.90508 1.56341 1.65192 1.39396 1.43715 1.30066 1.07419 1.35210 1.21766 0.93409 0.97466 0.90856 1.19618 1.14228 1.13159 1.00763 0.91350 1.26114 0.98257 0.98618 0.96830 1.70031 1.42867 1.28408 1.11526 0.84954 0.77715 0.78009 0.77772 1.18360 1.19625 1.20498 1.23246 0.88689 0.99507 1.06308 0.89608 0.85866 0.86893 0.93673 0.91399 0.90349 0.91287 0.82853 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.49 71.24 0.75 -0.26 15 2 C 0.11 2.74 7.45 46.90 0.35 3.09 15 3 N -0.34 -12.19 12.45 -40.62 -0.51 -12.69 15 4 O -0.23 -10.48 11.83 -20.29 -0.24 -10.72 15 5 C 0.04 1.50 3.36 30.45 0.10 1.60 15 6 H 0.11 4.13 8.03 -2.39 -0.02 4.11 15 7 C 0.43 22.93 6.99 87.66 0.61 23.54 15 8 O -0.63 -39.81 16.31 14.95 0.24 -39.57 15 9 N -0.45 -23.06 3.01 -658.88 -1.98 -25.05 15 10 C 0.11 4.41 8.35 127.77 1.07 5.48 15 11 C -0.35 -20.04 9.22 84.04 0.77 -19.26 15 12 H 0.07 4.24 7.46 -2.91 -0.02 4.22 15 13 C 0.00 0.25 5.06 84.93 0.43 0.68 15 14 N -0.89 -45.99 10.84 21.66 0.23 -45.75 15 15 Si 0.99 41.87 29.57 68.60 2.03 43.89 15 16 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 15 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 19 C -0.14 -3.88 5.38 30.76 0.17 -3.71 15 20 H 0.09 1.04 8.14 -2.38 -0.02 1.02 15 21 H 0.12 0.77 8.14 -2.39 -0.02 0.75 15 22 H 0.11 0.95 8.14 -2.39 -0.02 0.93 15 23 H 0.04 1.92 7.86 -2.38 -0.02 1.90 15 24 H 0.07 2.95 6.78 -2.39 -0.02 2.93 15 25 H 0.08 2.38 4.45 -2.39 -0.01 2.37 15 26 H 0.28 13.30 8.31 -92.71 -0.77 12.53 15 27 H 0.15 2.88 6.61 -2.39 -0.02 2.86 15 28 H 0.10 2.98 7.90 -2.39 -0.02 2.96 15 Total: -1.00 -78.58 243.46 5.20 -73.39 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.17 Total: 5.34 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.25 Total: 11.15 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.25 Total: -83.49 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: 0.00 Total: -50.29 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -78.58 5.20 -73.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824855436.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.002 kcal (2) G-P(sol) polarization free energy of solvation -78.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds